Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Forward (+)

12137036 .. 12138440

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0147800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGGGAGAAGAAAAGGGCCAGGCAATTGGGATCGATCTAGGGACGACTTACTCTTGCGTAGCAATTTGGCAGAACGATCATGTGGAAATCATAGTGAATGATCAGGGCAACAGGACCACTCCATCTTATGTTGCCTTCAATGATACTGAGCGTTTGGTTGGTGATGCAGCTTTCAACCAGGTCATCAAGAACCCCATCAATTCAGTATTTGATGCAAAGCGATTAATAGGTAGGAGGTTCAGTGACGACTCTGTTCAAAGTGATATAAAGCTCTGGCCATTCAAGGTCATTGAAGGTGTTGATGACAAGCCTATGATTGTGGTTAGCCATGAGGGTCAAGAGAGACAGTTTGCTGCTGAAGAGATCTCCTCCATGGTTTTGGCAAAGATGCGGGATATTGCTGAGGAGTTCCTTGACTCAACAGTGAAAAATGCTGTTATCACAGTGCCCGCTTACTTCAGTGACTCACAACGCCAGGCGACAAGAAATGCAGGTGAATTTGCAGGTCTAAAGGTGATGCGCATAATCAATGAACCAACAGCTGCAGCAATTGCTTATGGTCTTGAAAAAAAGGTTGGTTGGTATAGCAAGAGAAATGTGATGATATTTGATTTGGGAGGTGGAACTTTAGATGTGTCACTGCTTACAATAAGCGCTGGTGTTTTTGAAGTGAAAGCCACGGCTGGAGACACTCACCTTGGTGGTGAAGATTTTGATAACAGAATGGTGGATTTCTGTGCTGCAGAATTTAAGAGGAAGCATGACTTGGATGTGAATGGAAACTCGAGAGCTCTTAGGAGGCTAAGAAATGCTTGTGAGAAGGCCAAGAGGAGACTTTCATTTACATCTTCGGTGGACGTTGAAATTGACTGTTTGGATCAGGGCATTGATTTGTATATTACTATATCCCGTGCCAAATTTGAACAACTGAACATGGATTTCTTCAACAAGTGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

320

Amino Acids

35.63

Weight (kDa)

5.22

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 319	8e-135	Hsp70 protein
MreB_Mbl	PF06723	142 - 252	2.5e-10	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc16I	TGCGCA	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	485, 497
AciI	CCGC	3 cut(s)	5, 394, 453
AclWI	GGATC	2 cut(s)	41, 888
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	3 cut(s)	500, 749, 920
AcuI	CTGAAG	2 cut(s)	381, 445
AfeI	AGCGCT	1 cut(s)	658
AjnI	CCWGG	3 cut(s)	21, 180, 477
AjuI	GAANNNNNNNTTGG	4 cut(s)	561, 593, 752, 784
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	4 cut(s)	173, 274, 545, 794
AluI	AGCT	4 cut(s)	173, 274, 545, 794
Alw21I	GWGCWC	1 cut(s)	796
Alw26I	GTCTC	3 cut(s)	340, 684, 829
AlwI	GGATC	2 cut(s)	41, 888
Ama87I	CYCGRG	1 cut(s)	787
Aor51HI	AGCGCT	1 cut(s)	658
AoxI	GGCC	3 cut(s)	19, 278, 825
ApeKI	GCWGC	5 cut(s)	170, 356, 545, 548, 743
ApoI	RAATTY	3 cut(s)	500, 749, 920
AseI	ATTAAT	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	525, 659
AspS9I	GGNCC	2 cut(s)	19, 117
AsuHPI	GGTGA	5 cut(s)	176, 509, 529, 689, 719
AvaI	CYCGRG	1 cut(s)	787
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	796
Bbv12I	GWGCWC	1 cut(s)	796
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	5 cut(s)	182, 343, 532, 560, 730
BccI	CCATC	2 cut(s)	133, 206
BceAI	ACGGC	1 cut(s)	699
BciT130I	CCWGG	3 cut(s)	23, 182, 479
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	340, 684, 829
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	2 cut(s)	546, 744
BfoI	RGCGCY	1 cut(s)	660
BfuAI	ACCTGC	2 cut(s)	485, 497
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	5 cut(s)	171, 357, 546, 549, 744
BlsI	GCNGC	5 cut(s)	172, 358, 547, 550, 745
Bme1390I	CCNGG	3 cut(s)	23, 182, 479
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	19, 117
BmrFI	CCNGG	3 cut(s)	23, 182, 479
BmsI	GCATC	4 cut(s)	157, 205, 381, 510
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	375, 681, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
BseBI	CCWGG	3 cut(s)	23, 182, 479
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	375, 681, 700
BseGI	GGATG	1 cut(s)	778
BseMII	CTCAG	2 cut(s)	141, 396
BseRI	GAGGAG	3 cut(s)	361, 422, 847
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	5 cut(s)	182, 343, 532, 560, 730
BshFI	GGCC	3 cut(s)	21, 280, 827
BshVI	ATCGAT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	796
BsiHKCI	CYCGRG	1 cut(s)	787
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	3 cut(s)	340, 684, 829
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	21, 280, 827
BsoBI	CYCGRG	1 cut(s)	787
Bsp1286I	GDGCHC	2 cut(s)	453, 796
Bsp143I	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	3 cut(s)	5, 394, 453
BspANI	GGCC	3 cut(s)	21, 280, 827
BspCNI	CTCAG	2 cut(s)	142, 397
BspDI	ATCGAT	1 cut(s)	36
BspMAI	CTGCAG	2 cut(s)	550, 748
BspMI	ACCTGC	2 cut(s)	485, 497
BspPI	GGATC	2 cut(s)	41, 888
BssECI	CCNNGG	3 cut(s)	375, 681, 700
BssMI	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
BssT1I	CCWWGG	2 cut(s)	375, 700
Bst2UI	CCWGG	3 cut(s)	23, 182, 479
Bst4CI	ACNGT	4 cut(s)	351, 427, 448, 875
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	4 cut(s)	150, 405, 797, 806
BstDSI	CCRYGG	2 cut(s)	375, 681
BstF5I	GGATG	1 cut(s)	778
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	2 cut(s)	525, 659
BstKTI	GATC	6 cut(s)	36, 40, 82, 106, 369, 883
BstMAI	GTCTC	3 cut(s)	340, 684, 829
BstMBI	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	3 cut(s)	23, 182, 479
BstSCI	CCNGG	3 cut(s)	21, 180, 477
BstSFI	CTRYAG	2 cut(s)	546, 744
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	5 cut(s)	182, 343, 532, 560, 730
BstX2I	RGATCY	1 cut(s)	366
BstXI	CCANNNNNNTGG	2 cut(s)	29, 382
BstYI	RGATCY	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	3 cut(s)	21, 280, 827
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	2 cut(s)	375, 681
BtsCI	GGATG	1 cut(s)	778
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	5 cut(s)	250, 432, 453, 469, 641
BveI	ACCTGC	2 cut(s)	485, 497
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	2 cut(s)	525, 659
Cfr13I	GGNCC	2 cut(s)	19, 117
ClaI	ATCGAT	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	180
CviAII	CATG	5 cut(s)	83, 332, 376, 764, 937
DdeI	CTNAG	4 cut(s)	150, 405, 797, 806
DpnI	GATC	6 cut(s)	35, 39, 81, 105, 368, 882
DpnII	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	794
Eco130I	CCWWGG	2 cut(s)	375, 700
Eco24I	GRGCYC	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	794
Eco57I	CTGAAG	2 cut(s)	381, 445
Eco88I	CYCGRG	1 cut(s)	787
EcoICRI	GAGCTC	1 cut(s)	794
EcoRII	CCWGG	3 cut(s)	21, 180, 477
EcoT14I	CCWWGG	2 cut(s)	375, 700
EcoT38I	GRGCYC	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	375, 700
FaeI	CATG	5 cut(s)	86, 335, 379, 767, 940
FalI	AAGNNNNNCTT	4 cut(s)	752, 784, 799, 831
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	5 cut(s)	82, 331, 375, 763, 936
FauI	CCCGC	2 cut(s)	387, 460
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	171, 357, 546, 549, 744
FokI	GGATG	1 cut(s)	785
FriOI	GRGCYC	1 cut(s)	796
Fsp4HI	GCNGC	5 cut(s)	171, 357, 546, 549, 744
FspAI	RTGCGCAY	1 cut(s)	524
FspBI	CTAG	1 cut(s)	41
FspI	TGCGCA	1 cut(s)	524
GlaI	GCGC	2 cut(s)	524, 658
GluI	GCNGC	5 cut(s)	171, 357, 546, 549, 744
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	3 cut(s)	21, 280, 827
HhaI	GCGC	2 cut(s)	525, 659
Hin1II	CATG	5 cut(s)	86, 335, 379, 767, 940
Hin6I	GCGC	2 cut(s)	523, 657
HinP1I	GCGC	2 cut(s)	523, 657
HinfI	GANTC	3 cut(s)	251, 419, 467
HphI	GGTGA	5 cut(s)	176, 509, 529, 689, 719
Hpy166II	GTNNAC	1 cut(s)	859
Hpy188III	TCNNGA	4 cut(s)	190, 341, 566, 789
Hpy8I	GTNNAC	1 cut(s)	859
HpyAV	CCTTC	3 cut(s)	148, 290, 817
HpyCH4III	ACNGT	4 cut(s)	351, 427, 448, 875
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	6 cut(s)	170, 218, 494, 506, 548, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	4 cut(s)	150, 405, 797, 806
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	5 cut(s)	86, 335, 379, 767, 940
HspAI	GCGC	2 cut(s)	523, 657
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
Lsp1109I	GCAGC	5 cut(s)	182, 343, 532, 560, 730
LweI	GCATC	4 cut(s)	157, 205, 381, 510
MabI	ACCWGGT	1 cut(s)	180
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	3 cut(s)	245, 464, 639
MalI	GATC	6 cut(s)	35, 39, 81, 105, 368, 882
MboI	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
MboII	GAAGA	5 cut(s)	23, 374, 722, 843, 937
MfeI	CAATTG	2 cut(s)	27, 552
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	453, 796
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	8 cut(s)	27, 66, 202, 500, 552, 749, 867, 920
MluNI	TGGCCA	1 cut(s)	280
MlyI	GAGTC	3 cut(s)	245, 413, 461
MnlI	CCTC	8 cut(s)	231, 328, 382, 400, 614, 750, 795, 825
Mox20I	TGGCCA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	2 cut(s)	227, 753
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	545
MspR9I	CCNGG	3 cut(s)	23, 182, 479
MunI	CAATTG	2 cut(s)	27, 552
MvaI	CCWGG	3 cut(s)	23, 182, 479
MwoI	GCNNNNNNNGC	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
NlaIII	CATG	5 cut(s)	86, 335, 379, 767, 940
NmuCI	GTSAC	3 cut(s)	245, 464, 639
NsbI	TGCGCA	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	702
PaeR7I	CTCGAG	1 cut(s)	787
PaqCI	CACCTGC	1 cut(s)	485
PkrI	GCNGC	5 cut(s)	172, 358, 547, 550, 745
PleI	GAGTC	3 cut(s)	245, 413, 461
PpsI	GAGTC	3 cut(s)	245, 413, 461
PshBI	ATTAAT	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	796
Psp6I	CCWGG	3 cut(s)	21, 180, 477
PspGI	CCWGG	3 cut(s)	21, 180, 477
PspPI	GGNCC	2 cut(s)	19, 117
PstI	CTGCAG	2 cut(s)	550, 748
PsuI	RGATCY	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	702
SacI	GAGCTC	1 cut(s)	796
SaqAI	TTAA	2 cut(s)	227, 753
SatI	GCNGC	5 cut(s)	171, 357, 546, 549, 744
Sau3AI	GATC	6 cut(s)	33, 37, 79, 103, 366, 880
Sau96I	GGNCC	2 cut(s)	19, 117
SchI	GAGTC	3 cut(s)	245, 413, 461
ScrFI	CCNGG	3 cut(s)	23, 182, 479
SduI	GDGCHC	2 cut(s)	453, 796
SexAI	ACCWGGT	1 cut(s)	180
SfaNI	GCATC	4 cut(s)	157, 205, 381, 510
SfcI	CTRYAG	2 cut(s)	546, 744
Sfr274I	CTCGAG	1 cut(s)	787
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	787
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	8 cut(s)	27, 66, 202, 500, 552, 749, 867, 920
SsiI	CCGC	3 cut(s)	5, 394, 453
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	796
StyD4I	CCNGG	3 cut(s)	21, 180, 477
StyI	CCWWGG	2 cut(s)	375, 700
TaaI	ACNGT	4 cut(s)	351, 427, 448, 875
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	2 cut(s)	36, 788
TasI	AATT	8 cut(s)	27, 66, 202, 500, 552, 749, 867, 920
Tru1I	TTAA	2 cut(s)	227, 753
Tru9I	TTAA	2 cut(s)	227, 753
TscAI	CASTG	5 cut(s)	250, 432, 453, 469, 648
TseFI	GTSAC	3 cut(s)	245, 464, 639
TseI	GCWGC	5 cut(s)	170, 356, 545, 548, 743
Tsp45I	GTSAC	3 cut(s)	245, 464, 639
TspDTI	ATGAA	2 cut(s)	549, 831
TspRI	CASTG	5 cut(s)	250, 432, 453, 469, 648
VpaK11BI	GGWCC	1 cut(s)	117
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	3 cut(s)	500, 749, 920
XhoI	CTCGAG	1 cut(s)	787
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.