Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Reverse (-)

19546227 .. 19547171

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATGAACATCGACGATACGACGTCTCCAATGGCCCACCCGATCGGTCCATCTCAGCCTCCTTCCGACCAAACCAAACAAGATCCGCCAAGTTTGCCCCAAGAAGCAGCTTCTTCTGTTTCGGCCGACAAGAAAGATCTAGCTTTGCTTGAAGAGAAACCGAAGCAGAGTCAAGAAGAAGATAGAGTGGACACTGGGAGAGAGAGGTTAAAGAAGCATCGGAGAGAGATCGCTGGTAGGGTTTGGATACCGGAGATATGGGGACAAGAAGAGCTTCTTAAGGATTGGATCGATTGTTCAACGTTTGACACGTGTCTAGTCCCTGCCGGAATCTCGTCTGCACGTACTGCTCTCGTAGAGGAAGCTAGGCGAGCTGCTTCAGCTTCTGGTGGGTTACATAATCGTTGCTTGATCTTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.51

Weight (kDa)

5.41

Isoelectric Point (pI)

69.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AciI	CCGC	1 cut(s)	86
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	2 cut(s)	77, 296
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	363
AcvI	CACGTG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	346
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	2 cut(s)	309, 311
AgsI	TTSAA	2 cut(s)	152, 300
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	6 cut(s)	110, 143, 274, 365, 374, 383
AluI	AGCT	6 cut(s)	110, 143, 274, 365, 374, 383
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	77, 296
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	33, 123
ApeKI	GCWGC	2 cut(s)	107, 374
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	34, 47
AvaII	GGWCC	1 cut(s)	47
BbrPI	CACGTG	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	119, 361
BccI	CCATC	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	3 cut(s)	140, 317, 366
BfrI	CTTAAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	108, 375
BlsI	GCNGC	2 cut(s)	109, 376
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	34, 47
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	291
BsaAI	YACGTR	2 cut(s)	312, 344
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	199
Bse8I	GATNNNNATC	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	291
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	119, 361
BsgI	GTGCAG	1 cut(s)	324
Bsh1285I	CGRYCG	2 cut(s)	45, 126
BshFI	GGCC	2 cut(s)	35, 125
BshVI	ATCGAT	1 cut(s)	291
BsiEI	CGRYCG	2 cut(s)	45, 126
BsiSI	CCGG	2 cut(s)	251, 327
BslFI	GGGAC	2 cut(s)	276, 305
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	276, 305
BsnI	GGCC	2 cut(s)	35, 125
Bsp143I	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	35, 125
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	291
BspPI	GGATC	2 cut(s)	77, 296
BspQI	GCTCTTC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
BssNI	GRCGYC	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	147, 264
BstACI	GRCGYC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBAI	YACGTR	2 cut(s)	312, 344
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	6 cut(s)	45, 85, 139, 231, 291, 414
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
BstMCI	CGRYCG	2 cut(s)	45, 126
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 347, 371, 380
BstPAI	GACNNNNGTC	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	119, 361
BstX2I	RGATCY	2 cut(s)	82, 136
BstYI	RGATCY	2 cut(s)	82, 136
BstZI	CGGCCG	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	35, 125
BsuTUI	ATCGAT	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	34, 47
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	345
CviJI	RGCY	9 cut(s)	35, 58, 110, 125, 143, 274, 365, 374, 383
CviKI_1	RGCY	9 cut(s)	35, 58, 110, 125, 143, 274, 365, 374, 383
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	6 cut(s)	44, 84, 138, 230, 290, 413
DpnII	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
EaeI	YGGCCR	1 cut(s)	123
EagI	CGGCCG	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	147, 264
EarI	CTCTTC	2 cut(s)	147, 264
EciI	GGCGGA	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	30
FaiI	YATR	2 cut(s)	259, 399
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 261, 293
FaqI	GGGAC	2 cut(s)	276, 305
Fnu4HI	GCNGC	2 cut(s)	108, 375
Fsp4HI	GCNGC	2 cut(s)	108, 375
FspBI	CTAG	3 cut(s)	140, 317, 366
GluI	GCNGC	2 cut(s)	108, 375
HaeIII	GGCC	2 cut(s)	35, 125
HapII	CCGG	2 cut(s)	251, 327
Hin1I	GRCGYC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	169, 330
HpaII	CCGG	2 cut(s)	251, 327
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	67, 222
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	2 cut(s)	17, 25
HpyAV	CCTTC	1 cut(s)	72
HpyCH4IV	ACGT	5 cut(s)	23, 302, 311, 343, 418
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 347, 371, 380
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	5 cut(s)	23, 302, 311, 343, 418
Hsp92I	GRCGYC	1 cut(s)	23
Kzo9I	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
LguI	GCTCTTC	1 cut(s)	264
LpnPI	CCDG	6 cut(s)	180, 219, 264, 336, 340, 372
Lsp1109I	GCAGC	2 cut(s)	119, 361
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	140, 317, 366
MaeII	ACGT	5 cut(s)	23, 302, 311, 343, 418
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	6 cut(s)	44, 84, 138, 230, 290, 413
MboI	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
MboII	GAAGA	5 cut(s)	105, 164, 188, 191, 281
MflI	RGATCY	2 cut(s)	82, 136
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	69, 198, 352
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	2 cut(s)	209, 279
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	2 cut(s)	251, 327
MwoI	GCNNNNNNNGC	4 cut(s)	94, 347, 371, 380
NdeII	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	109, 376
Ple19I	CGATCG	1 cut(s)	45
PleI	GAGTC	1 cut(s)	177
PmaCI	CACGTG	1 cut(s)	312
PmlI	CACGTG	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	177
Ppu21I	YACGTR	2 cut(s)	312, 344
PshAI	GACNNNNGTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	302
PspCI	CACGTG	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	34, 47
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	82, 136
PvuI	CGATCG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	209, 279
SatI	GCNGC	2 cut(s)	108, 375
Sau3AI	GATC	6 cut(s)	42, 82, 136, 228, 288, 411
Sau96I	GGNCC	2 cut(s)	34, 47
SchI	GAGTC	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	3 cut(s)	140, 317, 366
TaiI	ACGT	5 cut(s)	26, 305, 314, 346, 421
TaqI	TCGA	2 cut(s)	12, 291
TaqII	GACCGA	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	2 cut(s)	209, 279
Tru9I	TTAA	2 cut(s)	209, 279
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	107, 374
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	3 cut(s)	140, 317, 366
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.