Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

17668518 .. 17671275

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG184800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTCATCAGCTTCAAGTTTCTTTGGTACCCAACAGCCAAACTAGCCCTTCTCTTCCACTGCTTCAGGCCAAGGAAAGCATCATCTCTGAGTCTCAGAGTGATAGTACTACCGAGCAAGGAAGCACGTCTCCGAAGAGGGATCAAGATAATGAAGAGGAGATTGAGTCAGCTTGGTCAAGAAATGAGGAGATTACAATATTAGGTCTGGCTTCAACTCAAGTGGGTGCAGCAGAAGAACCCAGTAAAGGCTATGACGATGTCTTGGCAGTAGCAGAAGATAGTGGACGTGAGAGGTTGAGGAAGCATCGGGTTGAGGTGGCGGGTCAGATGAATCCAATTGCCACCAGTTCCATGAGTCTCAAGGGGCTTCTGGGGAAGGAGGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.99

Weight (kDa)

4.65

Isoelectric Point (pI)

74.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	391
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	2 cut(s)	30, 109
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	17, 216
AjiI	CACGTC	2 cut(s)	129, 290
AluBI	AGCT	2 cut(s)	13, 173
AluI	AGCT	2 cut(s)	13, 173
Alw26I	GTCTC	3 cut(s)	99, 135, 365
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	230
Asp718I	GGTACC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	99, 135, 365
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	109
BmgBI	CACGTC	2 cut(s)	129, 290
BmiI	GGNNCC	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	90, 316
BmuI	ACTGGG	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	204, 347
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	243, 348
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	81, 110
BseNI	ACTGG	2 cut(s)	243, 348
BseRI	GAGGAG	2 cut(s)	173, 203
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	3 cut(s)	99, 135, 365
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	82, 109
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	243, 348
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	72
Bst6I	CTCTTC	3 cut(s)	60, 131, 150
BstDEI	CTNAG	2 cut(s)	90, 96
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	3 cut(s)	99, 135, 365
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	71
BtrI	CACGTC	2 cut(s)	129, 290
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	29, 108
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	9 cut(s)	5, 13, 39, 48, 71, 173, 212, 252, 370
CviKI_1	RGCY	9 cut(s)	5, 13, 39, 48, 71, 173, 212, 252, 370
CviQI	GTAC	2 cut(s)	29, 108
DdeI	CTNAG	2 cut(s)	90, 96
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	60, 131, 150
EarI	CTCTTC	3 cut(s)	60, 131, 150
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	358
FaiI	YATR	3 cut(s)	255, 356, 391
FatI	CATG	1 cut(s)	354
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	4 cut(s)	92, 167, 334, 358
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	4 cut(s)	91, 99, 135, 330
Hpy188III	TCNNGA	2 cut(s)	146, 180
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	60, 373
HpyCH4IV	ACGT	2 cut(s)	128, 289
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	2 cut(s)	90, 96
HpySE526I	ACGT	2 cut(s)	128, 289
Hsp92II	CATG	1 cut(s)	358
KpnI	GGTACC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	53, 194, 256, 359, 361
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	2 cut(s)	90, 316
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	128, 289
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	5 cut(s)	47, 148, 167, 248, 290
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	3 cut(s)	101, 176, 367
MnlI	CCTC	7 cut(s)	132, 151, 181, 288, 294, 310, 376
MunI	CAATTG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	334
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	3 cut(s)	100, 175, 366
PpsI	GAGTC	3 cut(s)	100, 175, 366
PsiI	TTATAA	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	2 cut(s)	30, 109
RsaNI	GTAC	2 cut(s)	29, 108
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	3 cut(s)	101, 176, 367
SetI	ASST	7 cut(s)	15, 131, 175, 208, 292, 299, 321
SfaNI	GCATC	2 cut(s)	90, 316
SmlI	CTYRAG	2 cut(s)	219, 362
SmoI	CTYRAG	2 cut(s)	219, 362
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	323
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	2 cut(s)	131, 292
TasI	AATT	1 cut(s)	339
TatI	WGTACW	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	168, 347
TspRI	CASTG	1 cut(s)	66
Tth111I	GACNNNGTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.