Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

12297972 .. 12298906

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATAGAAAAGCCAGCCCTACTGAAAATGGCTCACCAGCTTCAACTTTCTTTGGTTCCCAACGACCAAACTAGCCCTTCTTTTCCATTGCTTCAGACCAAAGAAAGCATCATCCCTCAGTATCAGAATGGTACTACTACTACCGAGCAAGAGATCGATCAAGATCATGAAGATGAGATCAAGTTAGGTCAGTCAAGAAATGAGGAGATCACAATATTAGGTGTGGCTTCATCTCAAGTGAGTGCAGCAGAAGAACCCAGTAGAGGGTGTTATGAGGTGTTGGCAGTAGCAGAAGAAAGTGGACGTGAGAGGTTGAAGAGGCACCGGATTGAGGTGGCGGGTCGGGTCTGGATTCCGGATATTTGGGGCCAGGAGGAGTTTCTCAAGGACTGGGTTGATTGTACTACTTTTGATGATACTTTGTTTCCTACTGGGATTATGTCAGCTCGTAGTGCTTTGGTTGAAGAAGGAAGGAGAGGAACTTCAAGCAGATTAAGAATAGAAAACAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.33

Weight (kDa)

4.83

Isoelectric Point (pI)

72.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	133, 403
AfiI	CCNNNNNNNGG	3 cut(s)	263, 264, 331
AgsI	TTSAA	4 cut(s)	44, 316, 464, 486
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	40, 446
AluI	AGCT	2 cut(s)	40, 446
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	371
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	3 cut(s)	57, 323, 368
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	3 cut(s)	252, 400, 441
BmsI	GCATC	1 cut(s)	117
BmuI	ACTGGG	3 cut(s)	252, 400, 441
BpuEI	CTTGAG	2 cut(s)	219, 368
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	162
BsaWI	WCCGGW	2 cut(s)	324, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 264, 331
Bse1I	ACTGG	3 cut(s)	258, 395, 436
Bse3DI	GCAATG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	162
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	156
BseGI	GGATG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	3 cut(s)	263, 264, 331
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	3 cut(s)	258, 395, 436
BseRI	GAGGAG	2 cut(s)	218, 389
BseXI	GCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	325, 356
BslI	CCNNNNNNNGG	3 cut(s)	263, 264, 331
BsnI	GGCC	1 cut(s)	369
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	153, 157, 163, 177, 207
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	156
BspEI	TCCGGA	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	57, 323, 368
BspT107I	GGYRCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	258, 395, 436
BssMI	GATC	5 cut(s)	153, 157, 163, 177, 207
Bst2UI	CCWGG	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	5 cut(s)	156, 160, 166, 180, 210
BstMBI	GATC	5 cut(s)	153, 157, 163, 177, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	132, 402
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	8 cut(s)	13, 17, 32, 40, 75, 227, 369, 446
CviKI_1	RGCY	8 cut(s)	13, 17, 32, 40, 75, 227, 369, 446
CviQI	GTAC	2 cut(s)	132, 402
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	5 cut(s)	155, 159, 165, 179, 209
DpnII	GATC	5 cut(s)	153, 157, 163, 177, 207
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	170
FaiI	YATR	3 cut(s)	168, 273, 440
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	2 cut(s)	325, 356
Hin1II	CATG	1 cut(s)	170
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	325, 356
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	96, 126
Hpy188III	TCNNGA	5 cut(s)	161, 167, 195, 349, 356
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	87, 461, 465
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	153, 157, 163, 177, 207
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	304
MalI	GATC	5 cut(s)	155, 159, 165, 179, 209
MboI	GATC	5 cut(s)	153, 157, 163, 177, 207
MboII	GAAGA	5 cut(s)	182, 263, 305, 328, 476
MnlI	CCTC	9 cut(s)	126, 196, 257, 268, 303, 312, 325, 367, 470
MroI	TCCGGA	1 cut(s)	355
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	2 cut(s)	325, 356
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	5 cut(s)	153, 157, 163, 177, 207
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	3 cut(s)	57, 323, 368
PagI	TCATGA	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	57, 323, 368
PspPI	GGNCC	1 cut(s)	367
RsaI	GTAC	2 cut(s)	133, 403
RsaNI	GTAC	2 cut(s)	132, 402
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	5 cut(s)	153, 157, 163, 177, 207
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	9 cut(s)	42, 190, 223, 279, 307, 314, 336, 448, 512
SfaNI	GCATC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	234, 383
SmoI	CTYRAG	2 cut(s)	234, 383
SsiI	CCGC	1 cut(s)	338
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	369
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	156
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	183, 219
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.