Rh3BG212800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003000
Physical Location & Seq
Forward (+)
19250351 .. 19250851
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG212800.1

Sequence Viewer

Length: 501 bp
ATGGCTCATCAGCTTCAAGTTTCTTTGGTACCCAACAGCCAAACTAGCCCTTCTCTTCCACTGCTTCAGGCCAAGGAAAGCATCATCTCTGAGTCTCAGAGTGATAGTACTACCGAGCAAGGAAGCACGTCTCCGAAGAGGGATCAAGATAATGAAGAGGAGATTGAGTCAGCTTGGTCAAGAAATGAGGAGATTACAATATTAGGTCTGGCTTCAACTCAAGTGGGTGCAGCAGAAGAACCCAGTAAAGGCTATGACGATGTCTTGGCAGTAGCAGAAGATAGTGGACGTGAGAGGTTGAGGAAGCATCGGGTTGAGGTGGCGGGTCAGGTCTGGATTCCGGATATTTGGGGCCAGGAGGAGTTTCTCAAGGACTGGGCTGATTGTACTGTTTTTGATGATTCTTTGTTTCCTAATGGGATTATGTCAGCTCGTAGTGCTTTGATTGAAGAAGGAAGGAGAGGAACTTCATGCAGATTAAGAATAGAAAACAGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009628 GO:0050896 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.45

Weight (kDa)

4.55

Isoelectric Point (pI)

80.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 30, 109, 388
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 17, 216, 449
AjiI CACGTC 2 cut(s) 129, 290
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 13, 173, 431
AluI AGCT 3 cut(s) 13, 173, 431
Alw26I GTCTC 2 cut(s) 99, 135
AlwI GGATC 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 2 cut(s) 69, 352
ApeKI GCWGC 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 99, 135
BfaI CTAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 356
BmgBI CACGTC 2 cut(s) 129, 290
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 30, 353
BmrFI CCNGG 1 cut(s) 356
BmrI ACTGGG 2 cut(s) 237, 385
BmsI GCATC 2 cut(s) 90, 316
BmuI ACTGGG 2 cut(s) 237, 385
BpuEI CTTGAG 2 cut(s) 204, 353
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 243, 380
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 2 cut(s) 81, 110
BseNI ACTGG 2 cut(s) 243, 380
BseRI GAGGAG 3 cut(s) 173, 203, 374
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 71, 354
BshNI GGYRCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 2 cut(s) 99, 135
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 2 cut(s) 71, 354
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 71, 354
BspCNI CTCAG 2 cut(s) 82, 109
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 30, 353
BspPI GGATC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 28
BsrI ACTGG 2 cut(s) 243, 380
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 3 cut(s) 60, 131, 150
BstDEI CTNAG 2 cut(s) 90, 96
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 2 cut(s) 99, 135
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 45, 437
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 71, 354
BtrI CACGTC 2 cut(s) 129, 290
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 3 cut(s) 29, 108, 387
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 1 cut(s) 471
CviQI GTAC 3 cut(s) 29, 108, 387
DdeI CTNAG 2 cut(s) 90, 96
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 3 cut(s) 60, 131, 150
EarI CTCTTC 3 cut(s) 60, 131, 150
Eco130I CCWWGG 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 474
FaiI YATR 3 cut(s) 255, 425, 472
FatI CATG 1 cut(s) 470
FauI CCCGC 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 45
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 71, 354
HapII CCGG 1 cut(s) 341
Hin1II CATG 1 cut(s) 474
HinfI GANTC 4 cut(s) 92, 167, 337, 401
HpaII CCGG 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 3 cut(s) 91, 99, 135
Hpy188III TCNNGA 4 cut(s) 146, 180, 334, 341
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 60, 446, 450
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 128, 289
HpyCH4V TGCA 2 cut(s) 230, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 437
HpyF3I CTNAG 2 cut(s) 90, 96
HpySE526I ACGT 2 cut(s) 128, 289
Hsp92II CATG 1 cut(s) 474
Kpn2I TCCGGA 1 cut(s) 340
KpnI GGTACC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 142
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 2 cut(s) 90, 316
MaeI CTAG 1 cut(s) 45
MaeII ACGT 2 cut(s) 128, 289
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 6 cut(s) 47, 148, 167, 248, 290, 461
MlyI GAGTC 2 cut(s) 101, 176
MnlI CCTC 8 cut(s) 132, 151, 181, 288, 294, 310, 352, 455
MroI TCCGGA 1 cut(s) 340
MseI TTAA 1 cut(s) 479
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 45, 437
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 474
NlaIV GGNNCC 2 cut(s) 30, 353
PfeI GAWTC 2 cut(s) 337, 401
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 2 cut(s) 100, 175
PpsI GAGTC 2 cut(s) 100, 175
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 30, 353
PspPI GGNCC 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 3 cut(s) 30, 109, 388
RsaNI GTAC 3 cut(s) 29, 108, 387
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 352
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 2 cut(s) 101, 176
ScrFI CCNGG 1 cut(s) 356
SfaNI GCATC 2 cut(s) 90, 316
SmlI CTYRAG 2 cut(s) 219, 368
SmoI CTYRAG 2 cut(s) 219, 368
SsiI CCGC 1 cut(s) 323
SspI AATATT 1 cut(s) 201
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 131, 292
TatI WGTACW 2 cut(s) 107, 386
TfiI GAWTC 2 cut(s) 337, 401
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TscAI CASTG 1 cut(s) 66
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 168, 459
TspRI CASTG 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 260
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.