Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017599.1

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 280

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgaagagaacccactactcgttgatggaggaaaaacccaacagcaatgttaacaacaccaccaaccagatcaaggttcctgcattctctgggaaaagaagcaaacactgcggcggcgtaggccacaacgagcttgtggggttacataacatgtctgcggcagacatgagctcgggacgcgagaggctgaagaaacacagggaggaggttgccggtcacgtgatggtaccggattcgtgggggcaggaggagctgctcaaggagtggatcgattactct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

7.95

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	226
AccII	CGCG	1 cut(s)	180
AciI	CCGC	3 cut(s)	111, 114, 158
AclWI	GGATC	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	209
AcvI	CACGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	150
AluBI	AGCT	3 cut(s)	133, 171, 253
AluI	AGCT	3 cut(s)	133, 171, 253
Alw21I	GWGCWC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	253
Asp718I	GGTACC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	19, 217
BisI	GCNGC	4 cut(s)	112, 115, 159, 254
BlsI	GCNGC	4 cut(s)	113, 116, 160, 255
BmeT110I	CYCGRG	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	78, 228
BpuEI	CTTGAG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	52
BseRI	GAGGAG	2 cut(s)	218, 263
BseXI	GCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	213, 230
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	69, 267
BspACI	CCGC	3 cut(s)	111, 114, 158
BspANI	GGCC	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	78, 228
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssMI	GATC	2 cut(s)	69, 267
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	72, 270
BstMBI	GATC	2 cut(s)	69, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 120, 177, 250
BstNSI	RCATGY	1 cut(s)	154
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	240
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	151, 166
CviJI	RGCY	5 cut(s)	123, 133, 171, 187, 253
CviKI_1	RGCY	5 cut(s)	123, 133, 171, 187, 253
CviQI	GTAC	1 cut(s)	227
DpnI	GATC	2 cut(s)	71, 269
DpnII	GATC	2 cut(s)	69, 267
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	209
Eco72I	CACGTG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	2 cut(s)	154, 169
FaiI	YATR	3 cut(s)	147, 152, 167
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	2 cut(s)	150, 165
Fnu4HI	GCNGC	4 cut(s)	112, 115, 159, 254
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	112, 115, 159, 254
GluI	GCNGC	4 cut(s)	112, 115, 159, 254
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	2 cut(s)	213, 230
HgaI	GACGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	154, 169
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	233
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	213, 230
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 120, 177, 250
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	154, 169
KpnI	GGTACC	1 cut(s)	230
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	69, 267
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	7 cut(s)	75, 80, 93, 184, 226, 230, 243
Lsp1109I	GCAGC	1 cut(s)	240
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	141, 215
MalI	GATC	2 cut(s)	71, 269
MboI	GATC	2 cut(s)	69, 267
MboII	GAAGA	2 cut(s)	16, 202
MhlI	GDGCHC	1 cut(s)	173
MnlI	CCTC	5 cut(s)	22, 177, 196, 199, 241
MseI	TTAA	1 cut(s)	51
MspI	CCGG	2 cut(s)	213, 230
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	4 cut(s)	108, 120, 177, 250
NdeII	GATC	2 cut(s)	69, 267
NlaIII	CATG	2 cut(s)	154, 169
NlaIV	GGNNCC	2 cut(s)	78, 228
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	113, 116, 160, 255
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	220
PscI	ACATGT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	173
PspCI	CACGTG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	78, 228
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	4 cut(s)	112, 115, 159, 254
Sau3AI	GATC	2 cut(s)	69, 267
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	6 cut(s)	78, 135, 173, 210, 222, 255
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	3 cut(s)	111, 114, 158
SstI	GAGCTC	1 cut(s)	173
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	270
TauI	GCSGC	3 cut(s)	114, 117, 161
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.