Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Reverse (-)

16534329 .. 16534829

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTCACCAGCTTCAACTTTCTTTGGTACTCAACGACCAAACTAGCCCTTCTCTTCCACTGCTTCAGGCCAAGGAAAGCATCATCTCCCATTCTCAGAATGATAGTACTACCGAGCAAGGAAGTACGTCTCCGAAGAGGGATCAAGATAATGAAGAAGAGATTGAGTCAGCTAGGTCAAGAAATGAGGAGATTACAATATTAGGTCTGGCTTTGGCTCAAGTGGATGCAGCAGAAGAACCCACTAAAGACTGTGATGAGGTCTTGGCAGTAGCAGAAGATAGTGGACGTGAGAGGTTGAGAAAGCACCGGGTTGAGGTGGCGGGTCGGGTCTGGATTCCGGATATTTGGGGCCAGGAGGAGTTTCTCAAGGACTGGGCTGATTGTACTGTTTTTGATGATTCTTTGTTTCCTAATGGGATTATGTCAGCTCGTAGTGCTTTGATTGAAGAAGGAAGGAGAGGAACTTCAGGCAGATTAAGAATAGAAAACAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.57

Weight (kDa)

4.64

Isoelectric Point (pI)

74.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	150
AcuI	CTGAAG	2 cut(s)	50, 453
AfaI	GTAC	4 cut(s)	30, 109, 127, 388
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	17, 449
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	13, 173, 431
AluI	AGCT	3 cut(s)	13, 173, 431
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	2 cut(s)	69, 352
ApeKI	GCWGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	2 cut(s)	45, 174
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	311, 356
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	2 cut(s)	311, 356
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	90, 217
BmuI	ACTGGG	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	204, 353
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	203, 374
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	71, 354
BsiSI	CCGG	2 cut(s)	310, 341
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	71, 354
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	71, 354
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	254, 391
Bst6I	CTCTTC	3 cut(s)	60, 131, 153
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	309, 354
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	71, 354
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	4 cut(s)	29, 108, 126, 387
CviQI	GTAC	4 cut(s)	29, 108, 126, 387
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	60, 131, 153
EarI	CTCTTC	3 cut(s)	60, 131, 153
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	50, 453
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	135
FaiI	YATR	1 cut(s)	425
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	45, 174
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	71, 354
HapII	CCGG	2 cut(s)	310, 341
HinfI	GANTC	3 cut(s)	167, 337, 401
HpaII	CCGG	2 cut(s)	310, 341
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	99, 135
Hpy188III	TCNNGA	4 cut(s)	146, 180, 334, 341
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	60, 446, 450
HpyCH4III	ACNGT	2 cut(s)	254, 391
HpyCH4IV	ACGT	2 cut(s)	128, 289
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	128, 289
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	2 cut(s)	90, 217
MaeI	CTAG	2 cut(s)	45, 174
MaeII	ACGT	2 cut(s)	128, 289
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	7 cut(s)	47, 148, 167, 170, 248, 290, 461
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	7 cut(s)	132, 181, 253, 288, 310, 352, 455
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	479
MspI	CCGG	2 cut(s)	310, 341
MspR9I	CCNGG	2 cut(s)	311, 356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	337, 401
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	352
RsaI	GTAC	4 cut(s)	30, 109, 127, 388
RsaNI	GTAC	4 cut(s)	29, 108, 126, 387
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	311, 356
SfaNI	GCATC	2 cut(s)	90, 217
SmlI	CTYRAG	2 cut(s)	219, 368
SmoI	CTYRAG	2 cut(s)	219, 368
SsiI	CCGC	1 cut(s)	323
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	2 cut(s)	45, 174
StyD4I	CCNGG	2 cut(s)	309, 354
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	254, 391
TaiI	ACGT	2 cut(s)	131, 292
TatI	WGTACW	2 cut(s)	107, 386
TfiI	GAWTC	2 cut(s)	337, 401
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	66
XspI	CTAG	2 cut(s)	45, 174
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.