Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

3892132 .. 3892614

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1035800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGAAGAAAACCATCTCAAATCTCTCTGCAGAAACCCATCGTCCAAAACATTCCAGTTCTACCAAATATGCAAGAAAATGGTGAGCAAATCTCAAAGAAAAATGACAGTTTTATGGAGCAGCAAGGAAGCACGTCACCAAAGATGCATGAAAACGACGAGGAACTTTCAACAATGGACGGTCAGGATTCAGCTGCTGTAGAAGGTGATGATGATGTTGTTGTAGATCAAGTGCCTACGGCGGCGGCGGCGGAAGAAGAAGAGAGTGGACGCGAGAGGTTACAGAAGCACAGAATGGAGGTGGCCGGACAGGTTTGGATTCCGGAGATATGGGGGCAGGAGGAGTTGCTGCAGGATTGGATAGATTGTTCAGCTTTTGATGCTTCTTTGTTTCCGAGTGGGATTATGACTGCTCGGTCTGCTTTGGTTGAGGAGGGGAGGAGAGAAAACACCGGCAGATTAAGGATAGAGAACAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.01

Weight (kDa)

4.52

Isoelectric Point (pI)

68.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
AccII	CGCG	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	4 cut(s)	242, 245, 248, 251
AcoI	YGGCCR	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	171
AjiI	CACGTC	1 cut(s)	135
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	2 cut(s)	194, 374
AluI	AGCT	2 cut(s)	194, 374
AlwNI	CAGNNNCTG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	121, 194, 349
AsuHPI	GGTGA	3 cut(s)	95, 129, 218
BbvI	GCAGC	3 cut(s)	133, 181, 336
BccI	CCATC	2 cut(s)	22, 47
BceAI	ACGGC	1 cut(s)	255
BfmI	CTRYAG	3 cut(s)	29, 198, 350
BisI	GCNGC	6 cut(s)	122, 195, 243, 246, 249, 350
BlsI	GCNGC	6 cut(s)	123, 196, 244, 247, 250, 351
BmgBI	CACGTC	1 cut(s)	135
BmsI	GCATC	2 cut(s)	135, 370
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BsaWI	WCCGGW	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	3 cut(s)	356, 446, 454
BseXI	GCAGC	3 cut(s)	133, 181, 336
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	306, 323, 453
BsnI	GGCC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	4 cut(s)	242, 245, 248, 251
BspANI	GGCC	1 cut(s)	305
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	273
BspMAI	CTGCAG	2 cut(s)	33, 354
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	452
BssMI	GATC	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	110, 182
Bst6I	CTCTTC	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 380, 419
BstSFI	CTRYAG	3 cut(s)	29, 198, 350
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	133, 181, 336
BsuRI	GGCC	1 cut(s)	305
BtrI	CACGTC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	452
CseI	GACGC	1 cut(s)	279
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	3 cut(s)	194, 305, 374
CviKI_1	RGCY	3 cut(s)	194, 305, 374
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	150
FaeI	CATG	1 cut(s)	152
FaiI	YATR	5 cut(s)	71, 116, 150, 331, 407
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	6 cut(s)	122, 195, 243, 246, 249, 350
Fsp4HI	GCNGC	6 cut(s)	122, 195, 243, 246, 249, 350
GluI	GCNGC	6 cut(s)	122, 195, 243, 246, 249, 350
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	3 cut(s)	306, 323, 453
HgaI	GACGC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	188, 319
HpaII	CCGG	3 cut(s)	306, 323, 453
HphI	GGTGA	3 cut(s)	95, 129, 218
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	2 cut(s)	185, 323
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	110, 182
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	31, 73, 148, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 380, 419
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	69, 170, 296, 319, 323, 336, 338, 460, 466
Lsp1109I	GCAGC	3 cut(s)	133, 181, 336
LweI	GCATC	2 cut(s)	135, 370
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	135, 279
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	18, 266, 269, 272
MnlI	CCTC	7 cut(s)	154, 270, 292, 334, 424, 427, 432
Mph1103I	ATGCAT	1 cut(s)	150
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	306, 323, 453
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	248, 380, 419
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	188, 319
PkrI	GCNGC	6 cut(s)	123, 196, 244, 247, 250, 351
PstI	CTGCAG	2 cut(s)	33, 354
PstNI	CAGNNNCTG	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	6 cut(s)	122, 195, 243, 246, 249, 350
Sau3AI	GATC	1 cut(s)	226
SetI	ASST	8 cut(s)	137, 196, 208, 281, 303, 315, 376, 479
SfaNI	GCATC	2 cut(s)	135, 370
SfcI	CTRYAG	3 cut(s)	29, 198, 350
SsiI	CCGC	4 cut(s)	242, 245, 248, 251
TaaI	ACNGT	2 cut(s)	110, 182
TaiI	ACGT	1 cut(s)	137
TaqII	GACCGA	1 cut(s)	405
TauI	GCSGC	3 cut(s)	245, 248, 251
TfiI	GAWTC	2 cut(s)	188, 319
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	3 cut(s)	121, 194, 349
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.