Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Reverse (-)

53241262 .. 53242188

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGAGAGCCCACTACTCGTTGATGGAGGAAAAACCCAACAGCAATGTTAACAACACCACCAACCAGATCAAGGTTCCTGCGTTCTCTGGGAAAAGAAGCAAACACTGCGGCAGCGGAGGCCAAGGCCACAACGAGCTTGTGGGGTTGCATAACATGTCTGCGGCAGACATGAGCTCGGGACGCGAGAGGCTGAAGAAACACCGGGAGGAGGTTGCCGGGCATGTGACAATACCGGATTCGTGGGGGCAGGAGGAGCTGCTCAAGGAGTGGATCGATTACTCTCCGTTTGATGCGTTGTTGGTTCCTACAGGGCTCAGCTCGGCTCGTGAAGCACTTGCTAGGGAAGGACGTCGTCGAGCAAGTAATAATAATGCTCAAGGAGTCATGAGGATAGAGAGTAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.11

Weight (kDa)

9.3

Isoelectric Point (pI)

56.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	355
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	111, 117, 164
AclWI	GGATC	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	73, 211
AflIII	ACRYGT	1 cut(s)	156
AluBI	AGCT	4 cut(s)	139, 177, 259, 321
AluI	AGCT	4 cut(s)	139, 177, 259, 321
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	2 cut(s)	121, 127
ApeKI	GCWGC	2 cut(s)	114, 259
AsuC2I	CCSGG	2 cut(s)	206, 220
AvaI	CYCGRG	1 cut(s)	178
BanII	GRGCYC	3 cut(s)	13, 179, 318
BauI	CACGAG	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	126, 246
BccI	CCATC	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	206, 220
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	4 cut(s)	112, 115, 165, 260
BlpI	GCTNAGC	1 cut(s)	317
BlsI	GCNGC	4 cut(s)	113, 116, 166, 261
Bme1390I	CCNGG	2 cut(s)	206, 220
BmeT110I	CYCGRG	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	78, 306
BmrFI	CCNGG	2 cut(s)	206, 220
BmsI	GCATC	1 cut(s)	283
Bpu1102I	GCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	248, 363
BpuMI	CCSGG	2 cut(s)	206, 220
Bsa29I	ATCGAT	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 211
Bse3DI	GCAATG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	73, 211
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	224, 269
BseXI	GCAGC	2 cut(s)	126, 246
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	123, 129
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	3 cut(s)	205, 219, 236
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	73, 211
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	123, 129
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	13, 179, 318
Bsp143I	GATC	2 cut(s)	69, 273
Bsp1720I	GCTNAGC	1 cut(s)	317
BspACI	CCGC	3 cut(s)	111, 117, 164
BspANI	GGCC	2 cut(s)	123, 129
BspCNI	CTCAG	1 cut(s)	330
BspDI	ATCGAT	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	78, 306
BspPI	GGATC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	69, 273
BssNI	GRCGYC	1 cut(s)	352
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	2 cut(s)	72, 276
BstMBI	GATC	2 cut(s)	69, 273
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 120, 183, 256, 332
BstNSI	RCATGY	2 cut(s)	160, 227
BstSCI	CCNGG	2 cut(s)	204, 218
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	126, 246
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	123, 129
BsuTUI	ATCGAT	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	276
CseI	GACGC	1 cut(s)	192
CviAII	CATG	4 cut(s)	157, 172, 224, 388
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	2 cut(s)	71, 275
DpnII	GATC	2 cut(s)	69, 273
Ecl136II	GAGCTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	3 cut(s)	13, 179, 318
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	3 cut(s)	13, 179, 318
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	4 cut(s)	160, 175, 227, 391
FaiI	YATR	5 cut(s)	153, 158, 173, 225, 389
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	4 cut(s)	156, 171, 223, 387
Fnu4HI	GCNGC	4 cut(s)	112, 115, 165, 260
FriOI	GRGCYC	3 cut(s)	13, 179, 318
Fsp4HI	GCNGC	4 cut(s)	112, 115, 165, 260
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	4 cut(s)	112, 115, 165, 260
HaeIII	GGCC	2 cut(s)	123, 129
HapII	CCGG	3 cut(s)	205, 219, 236
HgaI	GACGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	160, 175, 227, 391
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	239, 384
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	3 cut(s)	205, 219, 236
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	180, 329, 388
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	2 cut(s)	357, 360
HpyAV	CCTTC	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 120, 183, 256, 332
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	352
Hsp92I	GRCGYC	1 cut(s)	352
Hsp92II	CATG	4 cut(s)	160, 175, 227, 391
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	69, 273
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	8 cut(s)	75, 80, 93, 218, 232, 236, 249, 297
Lsp1109I	GCAGC	2 cut(s)	126, 246
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	71, 275
MboI	GATC	2 cut(s)	69, 273
MboII	GAAGA	2 cut(s)	16, 208
MhlI	GDGCHC	3 cut(s)	13, 179, 318
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	7 cut(s)	22, 113, 183, 202, 205, 247, 384
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	3 cut(s)	205, 219, 236
MspR9I	CCNGG	2 cut(s)	206, 220
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	5 cut(s)	108, 120, 183, 256, 332
NciI	CCSGG	2 cut(s)	206, 220
NdeII	GATC	2 cut(s)	69, 273
NlaIII	CATG	4 cut(s)	160, 175, 227, 391
NlaIV	GGNNCC	2 cut(s)	78, 306
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	2 cut(s)	160, 227
PagI	TCATGA	1 cut(s)	387
PciI	ACATGT	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	354
PkrI	GCNGC	4 cut(s)	113, 116, 166, 261
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PscI	ACATGT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	78, 306
PsyI	GACNNNGTC	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	4 cut(s)	112, 115, 165, 260
Sau3AI	GATC	2 cut(s)	69, 273
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	2 cut(s)	206, 220
SduI	GDGCHC	3 cut(s)	13, 179, 318
SetI	ASST	8 cut(s)	78, 141, 179, 216, 261, 323, 355, 407
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	263, 378
SmoI	CTYRAG	2 cut(s)	263, 378
SsiI	CCGC	3 cut(s)	111, 117, 164
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	204, 218
StyI	CCWWGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	276, 358
TauI	GCSGC	2 cut(s)	114, 167
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	114, 259
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	113
Tth111I	GACNNNGTC	1 cut(s)	354
XceI	RCATGY	2 cut(s)	160, 227
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.