Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

17962690 .. 17964068

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24891.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATAAATTGCATCAACTTATTTAACAGTATTGACATCGGAATGAAGAGAACCCACTACTCGTTCATGGAGGAAAACCCTAACAACGCCGCCAACCAGATCAAGCTTCCTGCATTCTCCGGGAAAAGAAGCAAACACTGTGGCGGAGGCCATAACGAGCTTGTGGGGTTACAGAACATGTCTGCGGCGGAGTGCTCTGGACGCGAGAGGCTGAAGAGACACCAGGAGGAGGTGGCTGGACATGTGACGATACCGGATTCTTGGGGTCAAGAAGAGCTGCTCAAGGATTGGATCGATTACTCTCCGTTTGATGCGCTGCTGGTTCCGACAGGGCTCAGCTCGGCTCGTGAAGCACTTGCTATGGAGGGACGTCGTCGAGCAAGTAATAATAATGCTCAAGGAGTCATGAGGATAGAGAGTAGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

6.96

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	373
AccII	CGCG	1 cut(s)	204
AciI	CCGC	4 cut(s)	90, 144, 185, 188
AclWI	GGATC	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	2 cut(s)	177, 241
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	4 cut(s)	106, 160, 277, 339
AluI	AGCT	4 cut(s)	106, 160, 277, 339
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	277, 316
AspLEI	GCGC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	264, 303
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	4 cut(s)	90, 186, 278, 317
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	4 cut(s)	91, 187, 279, 318
Bme1390I	CCNGG	2 cut(s)	121, 224
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	121, 224
BmsI	GCATC	2 cut(s)	21, 301
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	266, 381
BpuMI	CCSGG	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	264, 303
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	120, 254
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	197, 336
Bsp143I	GATC	2 cut(s)	99, 291
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	4 cut(s)	90, 144, 185, 188
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	348
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	267
BssMI	GATC	2 cut(s)	99, 291
BssNI	GRCGYC	1 cut(s)	370
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	29, 140
Bst6I	CTCTTC	3 cut(s)	41, 209, 267
BstACI	GRCGYC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	102, 294
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	99, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 350
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	181, 245
BstSCI	CCNGG	2 cut(s)	119, 222
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	264, 303
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	210
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	4 cut(s)	67, 178, 242, 406
CviJI	RGCY	9 cut(s)	106, 150, 160, 211, 236, 277, 334, 339, 344
CviKI_1	RGCY	9 cut(s)	106, 150, 160, 211, 236, 277, 334, 339, 344
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	2 cut(s)	101, 293
DpnII	GATC	2 cut(s)	99, 291
Eam1104I	CTCTTC	3 cut(s)	41, 209, 267
EarI	CTCTTC	3 cut(s)	41, 209, 267
EciI	GGCGGA	2 cut(s)	159, 203
Eco24I	GRGCYC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	4 cut(s)	70, 181, 245, 409
FaiI	YATR	6 cut(s)	68, 153, 179, 243, 362, 407
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	4 cut(s)	66, 177, 241, 405
Fnu4HI	GCNGC	4 cut(s)	90, 186, 278, 317
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	4 cut(s)	90, 186, 278, 317
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	4 cut(s)	90, 186, 278, 317
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	120, 254
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	70, 181, 245, 409
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	257, 402
HpaII	CCGG	2 cut(s)	120, 254
Hpy188I	TCNGA	2 cut(s)	41, 327
Hpy188III	TCNNGA	4 cut(s)	198, 269, 347, 406
Hpy99I	CGWCG	2 cut(s)	375, 378
HpyCH4III	ACNGT	2 cut(s)	29, 140
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	2 cut(s)	12, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 350
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	70, 181, 245, 409
HspAI	GCGC	1 cut(s)	314
Kzo9I	GATC	2 cut(s)	99, 291
LguI	GCTCTTC	1 cut(s)	267
Lsp1109I	GCAGC	2 cut(s)	264, 303
LweI	GCATC	2 cut(s)	21, 301
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	168, 244
MalI	GATC	2 cut(s)	101, 293
MboI	GATC	2 cut(s)	99, 291
MboII	GAAGA	3 cut(s)	58, 226, 284
MhlI	GDGCHC	2 cut(s)	197, 336
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	7 cut(s)	64, 140, 201, 220, 223, 358, 402
MseI	TTAA	2 cut(s)	24, 427
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	2 cut(s)	120, 254
MspR9I	CCNGG	2 cut(s)	121, 224
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	201, 350
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	99, 291
NlaIII	CATG	4 cut(s)	70, 181, 245, 409
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	2 cut(s)	181, 245
PagI	TCATGA	1 cut(s)	405
PciI	ACATGT	2 cut(s)	177, 241
PciSI	GCTCTTC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	91, 187, 279, 318
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PscI	ACATGT	2 cut(s)	177, 241
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	324
PsyI	GACNNNGTC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	24, 427
SatI	GCNGC	4 cut(s)	90, 186, 278, 317
Sau3AI	GATC	2 cut(s)	99, 291
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	2 cut(s)	121, 224
SduI	GDGCHC	2 cut(s)	197, 336
SetI	ASST	7 cut(s)	108, 162, 234, 279, 341, 373, 425
SfaNI	GCATC	2 cut(s)	21, 301
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	281, 396
SmoI	CTYRAG	2 cut(s)	281, 396
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	4 cut(s)	90, 144, 185, 188
StyD4I	CCNGG	2 cut(s)	119, 222
TaaI	ACNGT	2 cut(s)	29, 140
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	294, 376
TasI	AATT	1 cut(s)	7
TauI	GCSGC	2 cut(s)	92, 188
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	24, 427
Tru9I	TTAA	2 cut(s)	24, 427
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	277, 316
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	55, 59
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	372
XceI	RCATGY	2 cut(s)	181, 245
ZraI	GACGTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.