Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

41802095 .. 41803406

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGAGAACCCACTACTCGTTGATGGAGGAAAAACCCAACAGCAATGTTAACACCACCAACCAGATCAAGGTTCCTGCATTCTCTGGGAAAAGAAGCAAACACTGCGGCGGCGTAGGCCACAACGAGCTTGTGGGGCTACATAACATGTCTGCGGCAGACATGAGCTCGGGACGCGAGAGGCTGAAGAAACACCGGGAGGAGGTTGCCGGGCATGTGACGATACCGGATTCGTGGGGGCAGGAGGAGCTGCTCAAGGAGTGGATCGATTACTCTCCGTTTGATGCGTTACTGGTTCCGACAGGGCTCAGCTCGGCTCGTGAAGCACTTGCTAGGGAAGGACGTCGTCGAGCAAGTAATAATAATGCTCAAGGAGTCATGAGGATAGAGAGTAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

9.3

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	346
AccII	CGCG	1 cut(s)	177
AciI	CCGC	3 cut(s)	108, 111, 155
AclWI	GGATC	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	70, 202
AflIII	ACRYGT	1 cut(s)	147
AluBI	AGCT	4 cut(s)	130, 168, 250, 312
AluI	AGCT	4 cut(s)	130, 168, 250, 312
Alw21I	GWGCWC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	250
AsuC2I	CCSGG	2 cut(s)	197, 211
AvaI	CYCGRG	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	170, 309
BauI	CACGAG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	197, 211
BfaI	CTAG	1 cut(s)	333
BisI	GCNGC	4 cut(s)	109, 112, 156, 251
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	4 cut(s)	110, 113, 157, 252
Bme1390I	CCNGG	2 cut(s)	197, 211
BmeT110I	CYCGRG	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	75, 297
BmrFI	CCNGG	2 cut(s)	197, 211
BmsI	GCATC	1 cut(s)	274
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	239, 354
BpuMI	CCSGG	2 cut(s)	197, 211
Bsa29I	ATCGAT	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 202
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	70, 202
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	2 cut(s)	215, 260
BseXI	GCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	120
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	3 cut(s)	196, 210, 227
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	70, 202
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	170, 309
Bsp143I	GATC	2 cut(s)	66, 264
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	3 cut(s)	108, 111, 155
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	321
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	75, 297
BspPI	GGATC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	66, 264
BssNI	GRCGYC	1 cut(s)	343
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	343
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	69, 267
BstMBI	GATC	2 cut(s)	66, 264
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 117, 136, 174, 247, 323
BstNSI	RCATGY	2 cut(s)	151, 218
BstSCI	CCNGG	2 cut(s)	195, 209
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	183
CviAII	CATG	4 cut(s)	148, 163, 215, 379
CviJI	RGCY	9 cut(s)	120, 130, 139, 168, 184, 250, 307, 312, 317
CviKI_1	RGCY	9 cut(s)	120, 130, 139, 168, 184, 250, 307, 312, 317
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	68, 266
DpnII	GATC	2 cut(s)	66, 264
Ecl136II	GAGCTC	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	170, 309
Eco53kI	GAGCTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	170, 309
FaeI	CATG	4 cut(s)	151, 166, 218, 382
FaiI	YATR	5 cut(s)	144, 149, 164, 216, 380
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	4 cut(s)	147, 162, 214, 378
Fnu4HI	GCNGC	4 cut(s)	109, 112, 156, 251
FriOI	GRGCYC	2 cut(s)	170, 309
Fsp4HI	GCNGC	4 cut(s)	109, 112, 156, 251
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	109, 112, 156, 251
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	3 cut(s)	196, 210, 227
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	4 cut(s)	151, 166, 218, 382
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	230, 375
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	3 cut(s)	196, 210, 227
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	3 cut(s)	171, 320, 379
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	2 cut(s)	348, 351
HpyAV	CCTTC	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 117, 136, 174, 247, 323
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	151, 166, 218, 382
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	66, 264
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	9 cut(s)	72, 77, 90, 209, 223, 227, 240, 278, 288
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	217, 288
MalI	GATC	2 cut(s)	68, 266
MboI	GATC	2 cut(s)	66, 264
MboII	GAAGA	2 cut(s)	16, 199
MhlI	GDGCHC	2 cut(s)	170, 309
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	22, 174, 193, 196, 238, 375
MseI	TTAA	1 cut(s)	51
MspI	CCGG	3 cut(s)	196, 210, 227
MspR9I	CCNGG	2 cut(s)	197, 211
Mva1269I	GAATGC	1 cut(s)	80
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	6 cut(s)	105, 117, 136, 174, 247, 323
NciI	CCSGG	2 cut(s)	197, 211
NdeII	GATC	2 cut(s)	66, 264
NlaIII	CATG	4 cut(s)	151, 166, 218, 382
NlaIV	GGNNCC	2 cut(s)	75, 297
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	2 cut(s)	151, 218
PagI	TCATGA	1 cut(s)	378
PciI	ACATGT	1 cut(s)	147
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	110, 113, 157, 252
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PscI	ACATGT	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	75, 297
PsyI	GACNNNGTC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	4 cut(s)	109, 112, 156, 251
Sau3AI	GATC	2 cut(s)	66, 264
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	197, 211
SduI	GDGCHC	2 cut(s)	170, 309
SetI	ASST	8 cut(s)	75, 132, 170, 207, 252, 314, 346, 398
SfaNI	GCATC	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	254, 369
SmoI	CTYRAG	2 cut(s)	254, 369
SsiI	CCGC	3 cut(s)	108, 111, 155
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	195, 209
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	267, 349
TauI	GCSGC	3 cut(s)	111, 114, 158
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	110
Tth111I	GACNNNGTC	1 cut(s)	345
XceI	RCATGY	2 cut(s)	151, 218
XspI	CTAG	1 cut(s)	333
ZraI	GACGTC	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.