Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Reverse (-)

70685 .. 71344

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgcaccctcttcttcaaactagaagacaacacagacacaccaaaaagggttgggcaaacgaggagaagaagaagctgaatcagctagcaatagcagcaaagtacacattcatccctgttcctccactgttgcatgaaagtaaagccagcctactgaaaatggctcaccagcttcaactttctttggtactcaacgaccaaactagcccttctcttccactgcttcaggccaaggaaagcatcatctcccattctcagaatgatagtactaccgagcaaggaagtacgtctccgaagagggatcaagataatgaagaagagattgagtcagctaggtcaagaaatgaggagattacaatattaggtctggctttggctcaagtgggtgcagcagaagaacccagtaaaggctgtgatgaggtcttggcagtagcagaagatagtggacgtgagaggttgagaaagcaccgggttgaggtggcgggtcgggtctggattccggatatttggggccaggaggagtttctcaaggactgggctgattgtactgtttttgatgattctttgtttcctaatgggattatgtcagctcgtagtgctttgattgaagaaggaaggagaggaacttcaggcatattaagaatagaaaacaggtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.58

Weight (kDa)

6.01

Isoelectric Point (pI)

72.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	309
AcuI	CTGAAG	2 cut(s)	209, 612
AfaI	GTAC	5 cut(s)	104, 189, 268, 286, 547
AfiI	CCNNNNNNNGG	2 cut(s)	407, 475
AgsI	TTSAA	3 cut(s)	17, 176, 608
AjiI	CACGTC	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	5 cut(s)	76, 85, 172, 332, 590
AluI	AGCT	5 cut(s)	76, 85, 172, 332, 590
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	2 cut(s)	228, 511
ApeKI	GCWGC	2 cut(s)	95, 389
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	107, 401
BciT130I	CCWGG	1 cut(s)	515
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	4 cut(s)	21, 86, 204, 333
BisI	GCNGC	2 cut(s)	96, 390
BlsI	GCNGC	2 cut(s)	97, 391
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	470, 515
BmgBI	CACGTC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	470, 515
BmrI	ACTGGG	2 cut(s)	396, 544
BmsI	GCATC	1 cut(s)	249
BmtI	GCTAGC	1 cut(s)	89
BmuI	ACTGGG	2 cut(s)	396, 544
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	2 cut(s)	363, 512
BpuMI	CCSGG	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 475
Bse1I	ACTGG	2 cut(s)	402, 539
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	407, 475
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	402, 539
BseRI	GAGGAG	3 cut(s)	77, 362, 533
BseXI	GCAGC	2 cut(s)	107, 401
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	230, 513
BsiSI	CCGG	2 cut(s)	469, 500
BslI	CCNNNNNNNGG	2 cut(s)	407, 475
BsmAI	GTCTC	1 cut(s)	294
BsmBI	CGTCTC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	230, 513
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	2 cut(s)	230, 513
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	512
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	402, 539
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	129, 550
Bst6I	CTCTTC	4 cut(s)	15, 219, 290, 312
BstC8I	GCNNGC	2 cut(s)	87, 148
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 95, 596
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	468, 513
BstV1I	GCAGC	2 cut(s)	107, 401
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	230, 513
BtrI	CACGTC	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	125, 218
Cac8I	GCNNGC	2 cut(s)	87, 148
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	5 cut(s)	103, 188, 267, 285, 546
CviAII	CATG	1 cut(s)	134
CviQI	GTAC	5 cut(s)	103, 188, 267, 285, 546
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	4 cut(s)	15, 219, 290, 312
EarI	CTCTTC	4 cut(s)	15, 219, 290, 312
Eco130I	CCWWGG	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	209, 612
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	1 cut(s)	137
FaiI	YATR	3 cut(s)	135, 584, 635
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	96, 390
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	96, 390
FspBI	CTAG	4 cut(s)	21, 86, 204, 333
GluI	GCNGC	2 cut(s)	96, 390
HaeIII	GGCC	2 cut(s)	230, 513
HapII	CCGG	2 cut(s)	469, 500
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	4 cut(s)	79, 326, 496, 560
HpaII	CCGG	2 cut(s)	469, 500
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	105, 446
Hpy188I	TCNGA	2 cut(s)	258, 294
Hpy188III	TCNNGA	4 cut(s)	305, 339, 493, 500
Hpy8I	GTNNAC	2 cut(s)	105, 446
HpyAV	CCTTC	3 cut(s)	219, 605, 609
HpyCH4III	ACNGT	2 cut(s)	129, 550
HpyCH4IV	ACGT	2 cut(s)	287, 448
HpyCH4V	TGCA	3 cut(s)	4, 133, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 95, 596
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	287, 448
Hsp92II	CATG	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	107, 401
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	4 cut(s)	21, 86, 204, 333
MaeII	ACGT	2 cut(s)	287, 448
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	335
MroI	TCCGGA	1 cut(s)	499
MseI	TTAA	1 cut(s)	638
MspI	CCGG	2 cut(s)	469, 500
MspR9I	CCNGG	2 cut(s)	470, 515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	82, 95, 596
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	1 cut(s)	301
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	79, 496, 560
PkrI	GCNGC	2 cut(s)	97, 391
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	511
RsaI	GTAC	5 cut(s)	104, 189, 268, 286, 547
RsaNI	GTAC	5 cut(s)	103, 188, 267, 285, 546
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	2 cut(s)	96, 390
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	470, 515
SfaNI	GCATC	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	378, 527
SmoI	CTYRAG	2 cut(s)	378, 527
SsiI	CCGC	1 cut(s)	482
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	4 cut(s)	21, 86, 204, 333
StyD4I	CCNGG	2 cut(s)	468, 513
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	129, 550
TaiI	ACGT	2 cut(s)	290, 451
TatI	WGTACW	3 cut(s)	102, 266, 545
TfiI	GAWTC	3 cut(s)	79, 496, 560
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	2 cut(s)	132, 225
TseI	GCWGC	2 cut(s)	95, 389
TspDTI	ATGAA	3 cut(s)	100, 150, 327
TspRI	CASTG	2 cut(s)	132, 225
XspI	CTAG	4 cut(s)	21, 86, 204, 333
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.