Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Reverse (-)

14599354 .. 14599623

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1073200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCAGGGTGTTGACTTACATGTTAGTAATCCTCAGATGGGCAACTCGGGACGTGAGAGACTAAAGAGGCACCAGGAGGAGGTGGCTGGCCACGTAGTGATACCGGATTCGTGGGGTCAGGAGGAGTTGCTCAAGGATTGGATCGACTACTCTCCTTTTGATGCGTTGTTGGTGCCAAAAGGTCTCACTTCGGCTCGTGAAGCACTTGCTATGGAGGGACGTCGAGCAACTACTTCTCAAGGAGTACTGAGGATAGAGAGTAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.96

Weight (kDa)

5.87

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	223
AccB1I	GGYRCC	2 cut(s)	69, 172
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	220
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	38, 79
AflIII	ACRYGT	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	52, 188
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	90
BanI	GGYRCC	2 cut(s)	69, 172
BauI	CACGAG	1 cut(s)	195
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	52, 188
BmcAI	AGTACT	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	71, 174
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	151
BpuEI	CTTGAG	2 cut(s)	116, 222
BsaAI	YACGTR	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 79
BseBI	CCWGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	38, 79
BseMII	CTCAG	2 cut(s)	47, 239
BseRI	GAGGAG	2 cut(s)	92, 137
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	2 cut(s)	69, 172
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	63, 231
BslI	CCNNNNNNNGG	2 cut(s)	38, 79
BsmAI	GTCTC	2 cut(s)	52, 188
BsmFI	GGGAC	2 cut(s)	63, 231
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	46, 240
BspLI	GGNNCC	2 cut(s)	71, 174
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	2 cut(s)	69, 172
BspTNI	GGTCTC	1 cut(s)	188
BssMI	GATC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	33, 248
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	2 cut(s)	52, 188
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	3 cut(s)	86, 90, 194
CviKI_1	RGCY	3 cut(s)	86, 90, 194
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	33, 248
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
DraIII	CACNNNGTG	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	23
FaiI	YATR	2 cut(s)	21, 212
FaqI	GGGAC	2 cut(s)	63, 231
FatI	CATG	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	3 cut(s)	48, 119, 197
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	225
HpyCH4IV	ACGT	3 cut(s)	52, 93, 220
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	33, 248
HpySE526I	ACGT	3 cut(s)	52, 93, 220
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	141
LpnPI	CCDG	5 cut(s)	59, 72, 86, 104, 117
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	3 cut(s)	52, 93, 220
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	90
MluNI	TGGCCA	1 cut(s)	90
MnlI	CCTC	7 cut(s)	42, 60, 70, 73, 115, 208, 243
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	90
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	71, 174
NspI	RCATGY	1 cut(s)	23
PciI	ACATGT	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	94
PscI	ACATGT	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	71, 174
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	141
ScaI	AGTACT	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	6 cut(s)	55, 84, 96, 184, 223, 266
SfaNI	GCATC	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	131, 237
SmoI	CTYRAG	2 cut(s)	131, 237
StyD4I	CCNGG	1 cut(s)	72
TaiI	ACGT	3 cut(s)	55, 96, 223
TaqI	TCGA	2 cut(s)	144, 223
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	107
XceI	RCATGY	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.