Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

2043254 .. 2043736

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGAAGAAAACCATCTCAAATCTCTCTGCAGAAACCCATCATCCAAAACACTCCAGTTCTACCAAATATGCAAGAAAATGGTGAGCAAATCTCAAAGAAAAATGACAGTTTTATGGAGCAGCAAGGAAGCACGTCACCTAAGATGCATGAAAAGGACGAGGAACTTTCAACAGTGGACGGTCAGGATTCGGCTGCTGTAGAAGGTGATGATGATGTTGTGGTAGATCAAGTGCCTACGGTGGCAGCGGCGGAAGAAGAAGAGAGTGGACTTGAGAGGTTAAAGAAGCATAGAATGGAGGTGGCCGGGCAGGTTTGGATTCCGGAGAAATGGGGGCAGGAGGAGTTGCTGCAGGATTGGATAGATTGTTCAGCTTTTGATGCTTCTTTATTTCCGAGTGGGATTATGACTGCTCGGTCTGCTTTGGTTGAGGAGGGGAGAAGAGAAAACTCCGGCAGATTAAGGATAGAAAACAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.98

Weight (kDa)

4.65

Isoelectric Point (pI)

62.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	301
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	2 cut(s)	248, 251
AcoI	YGGCCR	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	171
AjiI	CACGTC	1 cut(s)	135
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	4 cut(s)	121, 194, 245, 349
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	3 cut(s)	95, 129, 218
BbvI	GCAGC	4 cut(s)	133, 181, 257, 336
BccI	CCATC	2 cut(s)	22, 47
BcnI	CCSGG	1 cut(s)	307
BfmI	CTRYAG	3 cut(s)	29, 198, 350
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	5 cut(s)	122, 195, 246, 249, 350
BlsI	GCNGC	5 cut(s)	123, 196, 247, 250, 351
Bme1390I	CCNGG	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	135, 370
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	322
BseGI	GGATG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	2 cut(s)	356, 446
BseXI	GCAGC	4 cut(s)	133, 181, 257, 336
BshFI	GGCC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	306, 323, 453
BsnI	GGCC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	248, 251
BspANI	GGCC	1 cut(s)	305
BspEI	TCCGGA	1 cut(s)	322
BspMAI	CTGCAG	2 cut(s)	33, 354
BspMI	ACCTGC	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	226
Bst4CI	ACNGT	4 cut(s)	110, 175, 182, 241
Bst6I	CTCTTC	2 cut(s)	255, 436
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 419
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	3 cut(s)	29, 198, 350
BstV1I	GCAGC	4 cut(s)	133, 181, 257, 336
BsuRI	GGCC	1 cut(s)	305
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	301
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	3 cut(s)	194, 305, 374
CviKI_1	RGCY	3 cut(s)	194, 305, 374
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	255, 436
EarI	CTCTTC	2 cut(s)	255, 436
EciI	GGCGGA	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	150
FaeI	CATG	1 cut(s)	152
FaiI	YATR	5 cut(s)	71, 116, 150, 291, 407
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	5 cut(s)	122, 195, 246, 249, 350
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	5 cut(s)	122, 195, 246, 249, 350
GluI	GCNGC	5 cut(s)	122, 195, 246, 249, 350
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	3 cut(s)	306, 323, 453
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	188, 319
HpaII	CCGG	3 cut(s)	306, 323, 453
HphI	GGTGA	3 cut(s)	95, 129, 218
Hpy166II	GTNNAC	2 cut(s)	178, 269
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	2 cut(s)	185, 323
Hpy8I	GTNNAC	2 cut(s)	178, 269
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	4 cut(s)	110, 175, 182, 241
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	31, 73, 148, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 419
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	69, 170, 296, 319, 323, 336, 338, 460, 466
Lsp1109I	GCAGC	4 cut(s)	133, 181, 257, 336
LweI	GCATC	2 cut(s)	135, 370
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	5 cut(s)	18, 266, 269, 272, 453
MnlI	CCTC	6 cut(s)	154, 270, 292, 334, 424, 427
Mph1103I	ATGCAT	1 cut(s)	150
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	2 cut(s)	281, 461
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	306, 323, 453
MspR9I	CCNGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	380, 419
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	188, 319
PkrI	GCNGC	5 cut(s)	123, 196, 247, 250, 351
PstI	CTGCAG	2 cut(s)	33, 354
SaqAI	TTAA	2 cut(s)	281, 461
SatI	GCNGC	5 cut(s)	122, 195, 246, 249, 350
Sau3AI	GATC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	307
SetI	ASST	8 cut(s)	137, 142, 208, 281, 303, 315, 376, 479
SfaNI	GCATC	2 cut(s)	135, 370
SfcI	CTRYAG	3 cut(s)	29, 198, 350
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	2 cut(s)	248, 251
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	4 cut(s)	110, 175, 182, 241
TaiI	ACGT	1 cut(s)	137
TaqII	GACCGA	1 cut(s)	405
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	188, 319
Tru1I	TTAA	2 cut(s)	281, 461
Tru9I	TTAA	2 cut(s)	281, 461
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	4 cut(s)	121, 194, 245, 349
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.