Rorug05G0215100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003000
Physical Location & Seq
Reverse (-)
22183824 .. 22186108
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0215100.1

Sequence Viewer

Length: 864 bp
ATGGTGTCCTCAAGAGTCAAGGCTCAAGCAGAGTTCTGGGTTCTTGAAGGCTTACTTGAAGGCTTGAAGGATGGGTTCAATCGATACTTCGATTTCAGCTTGAAGGCTGGGTTCGATTTCGGATTTCTGGTTACTGATATGATCATGACTCTCGCACCTCCATCGTTATGCTCCTATGATGGAACAGATTGTGGTCCCAATCGTAAGTCAGAAATTATCAACCAGCGGATTAACGTGCATTCTCCTGATATTCAAGAAATAGTGTACCAGAATTACGTTACCAAGGAATCTTCAAACTATTTATTGGACTCCATTCAACCAGTACTTGTTTTATCTGGTCATGATCATGATCAGTGTGATGTTGTCCACAAGTCAAAATATGGGCTTCACACTGTGGGGACAATAAGCTGGCAGCAGGGAAATGTGTATCCATCTTTCATGTTAGTGTCTGCTAGTAATTTTGTCCCTTCAAATACATCCAGTTCTGAAGAGGCAGTCTTAACTCAACTGTGCTTTCTTCCTGTGCAACTACACATATATATATGGTATCTGGCACTATTTGTTTTGACCCTTCTTGCCCTCCTGCTTTGGCCAACTGGTGGTGTGAGTTTTTGGCATCATTTTAGTGATCTATTGGCGTGTGGCAAACAACTAATAAGTAGCATTACAAGTAGACCAAATGAGAAAGATGAAGATCTAAACTGTGAATATGAGATGATGTGGGATGCAGAAGGATCAATGCATCTTGTCAAGAAAACCTTAAACGTTGCTGTTACATGCATAAGTGAGACAATCTCAGTTGAAAGCAGAGGTACTACTGTGATCCGGCCGACAGCTAAAAAGAATATTTCATCGCTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.16

Weight (kDa)

5.31

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 599
AccI GTMKAC 1 cut(s) 673
AciI CCGC 1 cut(s) 226
AclI AACGTT 1 cut(s) 765
AclWI GGATC 2 cut(s) 742, 817
AcoI YGGCCR 2 cut(s) 590, 827
AcuI CTGAAG 1 cut(s) 507
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 3 cut(s) 266, 324, 814
AfiI CCNNNNNNNGG 1 cut(s) 599
AluBI AGCT 3 cut(s) 99, 408, 836
AluI AGCT 3 cut(s) 99, 408, 836
Alw26I GTCTC 1 cut(s) 782
AlwI GGATC 2 cut(s) 742, 817
AoxI GGCC 2 cut(s) 590, 827
ApeKI GCWGC 2 cut(s) 412, 856
AspS9I GGNCC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BalI TGGCCA 1 cut(s) 592
BbvI GCAGC 2 cut(s) 424, 843
BccI CCATC 4 cut(s) 65, 169, 173, 439
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BciVI GTATCC 1 cut(s) 438
BclI TGATCA 3 cut(s) 141, 343, 349
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 1 cut(s) 453
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 694
BisI GCNGC 2 cut(s) 413, 857
BlsI GCNGC 2 cut(s) 414, 858
BmcAI AGTACT 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 3 cut(s) 625, 715, 751
BplI GAGNNNNNCTC 2 cut(s) 779, 811
BpuEI CTTGAG 1 cut(s) 9
Bsa29I ATCGAT 1 cut(s) 82
BsaBI GATNNNNATC 2 cut(s) 348, 693
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 599
Bse1I ACTGG 3 cut(s) 320, 480, 601
Bse8I GATNNNNATC 2 cut(s) 348, 693
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 3 cut(s) 76, 476, 730
BseJI GATNNNNATC 2 cut(s) 348, 693
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 3 cut(s) 320, 480, 601
BseX3I CGGCCG 1 cut(s) 827
BseXI GCAGC 2 cut(s) 424, 843
BseYI CCCAGC 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 830
BshFI GGCC 2 cut(s) 592, 829
BshVI ATCGAT 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 830
BsiSI CCGG 1 cut(s) 826
BslFI GGGAC 3 cut(s) 180, 412, 449
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 3 cut(s) 180, 412, 449
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 2 cut(s) 592, 829
Bsp143I GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
BspACI CCGC 1 cut(s) 226
BspANI GGCC 2 cut(s) 592, 829
BspCNI CTCAG 1 cut(s) 809
BspDI ATCGAT 1 cut(s) 82
BspHI TCATGA 3 cut(s) 144, 340, 346
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 2 cut(s) 742, 817
BsrI ACTGG 3 cut(s) 320, 480, 601
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 394, 510, 704, 820
Bst6I CTCTTC 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 796
BstF5I GGATG 3 cut(s) 76, 476, 730
BstKTI GATC 7 cut(s) 144, 346, 352, 631, 697, 737, 825
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
BstMCI CGRYCG 1 cut(s) 830
BstNSI RCATGY 1 cut(s) 780
BstV1I GCAGC 2 cut(s) 424, 843
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BstZI CGGCCG 1 cut(s) 827
Bsu15I ATCGAT 1 cut(s) 82
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 592, 829
BsuTUI ATCGAT 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 3 cut(s) 76, 476, 730
BtsIMutI CAGTG 2 cut(s) 359, 390
Cac8I GCNNGC 1 cut(s) 410
CciI TCATGA 3 cut(s) 144, 340, 346
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 82
Csp6I GTAC 3 cut(s) 265, 323, 813
CviAII CATG 5 cut(s) 145, 341, 347, 439, 777
CviQI GTAC 3 cut(s) 265, 323, 813
DdeI CTNAG 1 cut(s) 796
DpnI GATC 7 cut(s) 143, 345, 351, 630, 696, 736, 824
DpnII GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
DraIII CACNNNGTG 1 cut(s) 394
EaeI YGGCCR 2 cut(s) 590, 827
EagI CGGCCG 1 cut(s) 827
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EclXI CGGCCG 1 cut(s) 827
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 194
Eco52I CGGCCG 1 cut(s) 827
Eco57I CTGAAG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 2 cut(s) 744, 782
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 5 cut(s) 148, 344, 350, 442, 780
FalI AAGNNNNNCTT 4 cut(s) 39, 71, 743, 775
FaqI GGGAC 3 cut(s) 180, 412, 449
FatI CATG 5 cut(s) 144, 340, 346, 438, 776
FbaI TGATCA 3 cut(s) 141, 343, 349
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 413, 857
FokI GGATG 3 cut(s) 83, 463, 737
Fsp4HI GCNGC 2 cut(s) 413, 857
FspBI CTAG 1 cut(s) 453
GluI GCNGC 2 cut(s) 413, 857
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 2 cut(s) 592, 829
HapII CCGG 1 cut(s) 826
Hin1II CATG 5 cut(s) 148, 344, 350, 442, 780
HinfI GANTC 4 cut(s) 15, 148, 287, 308
HpaII CCGG 1 cut(s) 826
Hpy166II GTNNAC 3 cut(s) 265, 367, 674
Hpy188I TCNGA 3 cut(s) 122, 211, 487
Hpy188III TCNNGA 8 cut(s) 12, 44, 145, 245, 254, 341, 347, 751
Hpy8I GTNNAC 3 cut(s) 265, 367, 674
HpyAV CCTTC 7 cut(s) 41, 53, 61, 97, 477, 581, 725
HpyCH4III ACNGT 4 cut(s) 394, 510, 704, 820
HpyCH4IV ACGT 3 cut(s) 234, 276, 765
HpyCH4V TGCA 5 cut(s) 238, 526, 728, 742, 780
HpyF3I CTNAG 1 cut(s) 796
HpySE526I ACGT 3 cut(s) 234, 276, 765
Hsp92II CATG 5 cut(s) 148, 344, 350, 442, 780
Ksp22I TGATCA 3 cut(s) 141, 343, 349
Kzo9I GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 2 cut(s) 424, 843
LweI GCATC 3 cut(s) 625, 715, 751
MaeI CTAG 1 cut(s) 453
MaeII ACGT 3 cut(s) 234, 276, 765
MaeIII GTNAC 3 cut(s) 130, 277, 772
MalI GATC 7 cut(s) 143, 345, 351, 630, 696, 736, 824
MboI GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
MboII GAAGA 4 cut(s) 282, 500, 509, 704
MflI RGATCY 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 592
MluCI AATT 3 cut(s) 213, 271, 457
MluNI TGGCCA 1 cut(s) 592
MlyI GAGTC 3 cut(s) 24, 142, 302
MnlI CCTC 5 cut(s) 19, 168, 484, 590, 803
Mox20I TGGCCA 1 cut(s) 592
Mph1103I ATGCAT 2 cut(s) 744, 782
MscI TGGCCA 1 cut(s) 592
MseI TTAA 3 cut(s) 231, 500, 761
MslI CAYNNNNRTG 4 cut(s) 166, 345, 443, 624
Msp20I TGGCCA 1 cut(s) 592
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 1 cut(s) 826
Mva1269I GAATGC 1 cut(s) 238
NdeII GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
NlaIII CATG 5 cut(s) 148, 344, 350, 442, 780
NlaIV GGNNCC 1 cut(s) 196
NsiI ATGCAT 2 cut(s) 744, 782
NspI RCATGY 1 cut(s) 780
PagI TCATGA 3 cut(s) 144, 340, 346
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 599
PkrI GCNGC 2 cut(s) 414, 858
PleI GAGTC 3 cut(s) 23, 142, 302
PpsI GAGTC 3 cut(s) 23, 142, 302
Psp1406I AACGTT 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 3 cut(s) 266, 324, 814
RsaNI GTAC 3 cut(s) 265, 323, 813
RseI CAYNNNNRTG 4 cut(s) 166, 345, 443, 624
SaqAI TTAA 3 cut(s) 231, 500, 761
SatI GCNGC 2 cut(s) 413, 857
Sau3AI GATC 7 cut(s) 141, 343, 349, 628, 694, 734, 822
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 324
SchI GAGTC 3 cut(s) 24, 142, 302
SetI ASST 9 cut(s) 101, 160, 237, 279, 410, 761, 768, 814, 838
SfaNI GCATC 3 cut(s) 625, 715, 751
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 4 cut(s) 166, 345, 443, 624
SmlI CTYRAG 2 cut(s) 10, 24
SmoI CTYRAG 2 cut(s) 10, 24
Sse9I AATT 3 cut(s) 213, 271, 457
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 847
SspMI CTAG 1 cut(s) 453
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 4 cut(s) 394, 510, 704, 820
TaiI ACGT 3 cut(s) 237, 279, 768
TaqI TCGA 3 cut(s) 82, 90, 114
TasI AATT 3 cut(s) 213, 271, 457
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 231, 500, 761
Tru9I TTAA 3 cut(s) 231, 500, 761
TscAI CASTG 2 cut(s) 359, 397
TseI GCWGC 2 cut(s) 412, 856
TspDTI ATGAA 3 cut(s) 427, 705, 840
TspRI CASTG 2 cut(s) 359, 397
Van91I CCANNNNNTGG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 1 cut(s) 780
XmiI GTMKAC 1 cut(s) 673
XspI CTAG 1 cut(s) 453
ZrmI AGTACT 1 cut(s) 324
Zsp2I ATGCAT 2 cut(s) 744, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.