Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

10060917 .. 10061642

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGAGAACCCATTTCTCATTCATGGAAGAAAATCCCAACAATATGATCAACATGGGCAGCCAACAGATTCCTGCTTTTTCCGGGAAAAGAACCAAACACCACGACCCTAACAATCTTGTGGGATTTCAAAGCATGCAGCAGCCTGAGGAATTGCATGGTGATGGTGCTGATCATCAGGTGCAGTCGGGACGTGAGAGGCTGAAAAGGCACCAAGAGGAGGTGGCTGGCCGCGTGACTATCCCCGATTCATGGGATCAGGAGGAGCTGCTCAAGGATTGGATCGATTATTCTCCGTTTGATGCGCTGTTGGTTCCAAAAGGACTCACTTCAGCTCGTGAGGCACTTGCCATGGAGGGACGTCGAGCAAGTAGTTCTCAAGGAGTGCTGAGAATAGAGAGTAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.49

Weight (kDa)

6.06

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	210
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	2 cut(s)	264, 290
AcoI	YGGCCR	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	361
AfiI	CCNNNNNNNGG	2 cut(s)	220, 252
AgsI	TTSAA	1 cut(s)	131
AjiI	CACGTC	1 cut(s)	194
AluBI	AGCT	2 cut(s)	268, 335
AluI	AGCT	2 cut(s)	268, 335
AlwI	GGATC	2 cut(s)	264, 290
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	4 cut(s)	60, 139, 142, 268
AspLEI	GCGC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	72, 151, 154, 255
BccI	CCATC	1 cut(s)	158
BclI	TGATCA	2 cut(s)	48, 172
BcnI	CCSGG	1 cut(s)	85
BisI	GCNGC	5 cut(s)	61, 140, 143, 232, 269
BlsI	GCNGC	5 cut(s)	62, 141, 144, 233, 270
Bme1390I	CCNGG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	212, 315
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	292
BpuEI	CTTGAG	2 cut(s)	257, 363
BpuMI	CCSGG	1 cut(s)	85
Bsa29I	ATCGAT	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 252
Bse21I	CCTNAGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	220, 252
BseMII	CTCAG	2 cut(s)	138, 380
BseRI	GAGGAG	2 cut(s)	233, 278
BseXI	GCAGC	4 cut(s)	72, 151, 154, 255
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	204, 372
BslI	CCNNNNNNNGG	2 cut(s)	220, 252
BsmFI	GGGAC	2 cut(s)	204, 372
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	48, 172, 256, 282
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	139, 381
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	212, 315
BspPI	GGATC	2 cut(s)	264, 290
BspT107I	GGYRCC	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	4 cut(s)	48, 172, 256, 282
BssNI	GRCGYC	1 cut(s)	361
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	137, 229
BstDEI	CTNAG	2 cut(s)	147, 389
BstDSI	CCRYGG	1 cut(s)	351
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	4 cut(s)	51, 175, 259, 285
BstMBI	GATC	4 cut(s)	48, 172, 256, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 341
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	83
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	72, 151, 154, 255
Bsu15I	ATCGAT	1 cut(s)	285
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	137, 229
CfoI	GCGC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	285
CviAII	CATG	6 cut(s)	25, 55, 136, 158, 252, 352
CviJI	RGCY	7 cut(s)	63, 145, 202, 227, 231, 268, 335
CviKI_1	RGCY	7 cut(s)	63, 145, 202, 227, 231, 268, 335
DdeI	CTNAG	2 cut(s)	147, 389
DpnI	GATC	4 cut(s)	50, 174, 258, 284
DpnII	GATC	4 cut(s)	48, 172, 256, 282
EaeI	YGGCCR	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	6 cut(s)	28, 58, 139, 161, 255, 355
FaiI	YATR	7 cut(s)	26, 47, 56, 137, 159, 253, 353
FaqI	GGGAC	2 cut(s)	204, 372
FatI	CATG	6 cut(s)	24, 54, 135, 157, 251, 351
FbaI	TGATCA	2 cut(s)	48, 172
Fnu4HI	GCNGC	5 cut(s)	61, 140, 143, 232, 269
Fsp4HI	GCNGC	5 cut(s)	61, 140, 143, 232, 269
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	5 cut(s)	61, 140, 143, 232, 269
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	6 cut(s)	28, 58, 139, 161, 255, 355
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	3 cut(s)	70, 248, 324
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	173
Hpy188III	TCNNGA	3 cut(s)	189, 260, 338
Hpy99I	CGWCG	1 cut(s)	366
HpyCH4IV	ACGT	2 cut(s)	193, 361
HpyCH4V	TGCA	3 cut(s)	139, 157, 184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 341
HpyF3I	CTNAG	2 cut(s)	147, 389
HpySE526I	ACGT	2 cut(s)	193, 361
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	6 cut(s)	28, 58, 139, 161, 255, 355
HspAI	GCGC	1 cut(s)	305
Ksp22I	TGATCA	2 cut(s)	48, 172
Kzo9I	GATC	4 cut(s)	48, 172, 256, 282
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	6 cut(s)	87, 97, 159, 164, 213, 245
Lsp1109I	GCAGC	4 cut(s)	72, 151, 154, 255
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	2 cut(s)	193, 361
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	4 cut(s)	50, 174, 258, 284
MboI	GATC	4 cut(s)	48, 172, 256, 282
MboII	GAAGA	2 cut(s)	16, 41
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	318
MnlI	CCTC	7 cut(s)	142, 192, 211, 214, 256, 334, 349
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	208, 341
NciI	CCSGG	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	4 cut(s)	48, 172, 256, 282
NlaIII	CATG	6 cut(s)	28, 58, 139, 161, 255, 355
NlaIV	GGNNCC	2 cut(s)	212, 315
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	70, 248
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	5 cut(s)	62, 141, 144, 233, 270
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	212, 315
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	5 cut(s)	61, 140, 143, 232, 269
Sau3AI	GATC	4 cut(s)	48, 172, 256, 282
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	7 cut(s)	183, 196, 225, 270, 337, 364, 407
SfaNI	GCATC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	272, 378
SmoI	CTYRAG	2 cut(s)	272, 378
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	2 cut(s)	196, 364
TaqI	TCGA	2 cut(s)	285, 364
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	70, 248
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	4 cut(s)	60, 139, 142, 268
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	13, 17, 240
TspGWI	ACGGA	1 cut(s)	285
XceI	RCATGY	1 cut(s)	139
ZraI	GACGTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.