RchiOBHm_Chr3g0473581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003000
Physical Location & Seq
Forward (+)
19417259 .. 19418030
772 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43924

Sequence Viewer

Length: 528 bp
ATGAAAGAAAAAGCCAGCCTACTGAAAATGGCTCATCAGCTTCAAGTTTCTTTGGTACCCAACAGCCAAACTAGCCCTTCTCTTCCACTGCTTCAGGCCAAGGAAAGCATCATCTCTGAGTCTCAGAGTGATAGTACTACCGAGCAAGGAAGCACGTCTCCGAAGAGGGATCAAGATAATGAAGAGGAGATTGAGTCAGCTTGGTCAAGAAATGAGGAGATTACAATATTAGGTCTGGCTTCAACTCAAGTGGGTGCAGCAGAAGAACCCAGTAAAGGCTATGACGATGTCTTGGCAGTAGCAGAAGATAGTGGACGTGAGAGGTTGAGGAAGCATCGGGTTGAGGTGGCGGGTCAGGTCTGGATTCCGGATATTTGGGGCCAGGAGGAGTTTCTCAAGGACTGGGCTGATTGTACTGTTTTTGATGATTCTTTGTTTCCTAATGGGATTATGTCAGCTCGTAGTGCTTTGATTGAAGAAGGAAGGAGAGGAACTTCATGCAGATTAAGAATAGAAAACAGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009628 GO:0050896 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.48

Weight (kDa)

4.71

Isoelectric Point (pI)

77.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 3 cut(s) 57, 136, 415
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 44, 243, 476
AjiI CACGTC 2 cut(s) 156, 317
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 3 cut(s) 40, 200, 458
AluI AGCT 3 cut(s) 40, 200, 458
Alw26I GTCTC 2 cut(s) 126, 162
AlwI GGATC 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 2 cut(s) 96, 379
ApeKI GCWGC 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 126, 162
BfaI CTAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 383
BmgBI CACGTC 2 cut(s) 156, 317
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 2 cut(s) 57, 380
BmrFI CCNGG 1 cut(s) 383
BmrI ACTGGG 2 cut(s) 264, 412
BmsI GCATC 2 cut(s) 117, 343
BmuI ACTGGG 2 cut(s) 264, 412
BpuEI CTTGAG 2 cut(s) 231, 380
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 270, 407
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 108, 137
BseNI ACTGG 2 cut(s) 270, 407
BseRI GAGGAG 3 cut(s) 200, 230, 401
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 2 cut(s) 98, 381
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 126, 162
BsmBI CGTCTC 1 cut(s) 162
BsnI GGCC 2 cut(s) 98, 381
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 1 cut(s) 350
BspANI GGCC 2 cut(s) 98, 381
BspCNI CTCAG 2 cut(s) 109, 136
BspEI TCCGGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 57, 380
BspPI GGATC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 270, 407
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 3 cut(s) 87, 158, 177
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 117, 123
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 126, 162
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 72, 464
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 98, 381
BtrI CACGTC 2 cut(s) 156, 317
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 56, 135, 414
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 1 cut(s) 498
CviQI GTAC 3 cut(s) 56, 135, 414
DdeI CTNAG 2 cut(s) 117, 123
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 3 cut(s) 87, 158, 177
EarI CTCTTC 3 cut(s) 87, 158, 177
Eco130I CCWWGG 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 1 cut(s) 501
FaiI YATR 3 cut(s) 282, 452, 499
FatI CATG 1 cut(s) 497
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 72
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 2 cut(s) 98, 381
HapII CCGG 1 cut(s) 368
Hin1II CATG 1 cut(s) 501
HinfI GANTC 4 cut(s) 119, 194, 364, 428
HpaII CCGG 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 118, 126, 162
Hpy188III TCNNGA 4 cut(s) 173, 207, 361, 368
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 87, 473, 477
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 2 cut(s) 155, 316
HpyCH4V TGCA 2 cut(s) 257, 501
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 464
HpyF3I CTNAG 2 cut(s) 117, 123
HpySE526I ACGT 2 cut(s) 155, 316
Hsp92II CATG 1 cut(s) 501
Kpn2I TCCGGA 1 cut(s) 367
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 2 cut(s) 117, 343
MaeI CTAG 1 cut(s) 72
MaeII ACGT 2 cut(s) 155, 316
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 6 cut(s) 74, 175, 194, 275, 317, 488
MlyI GAGTC 2 cut(s) 128, 203
MnlI CCTC 8 cut(s) 159, 178, 208, 315, 321, 337, 379, 482
MroI TCCGGA 1 cut(s) 367
MseI TTAA 1 cut(s) 506
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 2 cut(s) 72, 464
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 501
NlaIV GGNNCC 2 cut(s) 57, 380
PfeI GAWTC 2 cut(s) 364, 428
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 2 cut(s) 127, 202
PpsI GAGTC 2 cut(s) 127, 202
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 57, 380
PspPI GGNCC 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 3 cut(s) 57, 136, 415
RsaNI GTAC 3 cut(s) 56, 135, 414
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 379
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 2 cut(s) 128, 203
ScrFI CCNGG 1 cut(s) 383
SfaNI GCATC 2 cut(s) 117, 343
SmlI CTYRAG 2 cut(s) 246, 395
SmoI CTYRAG 2 cut(s) 246, 395
SsiI CCGC 1 cut(s) 350
SspI AATATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 2 cut(s) 158, 319
TatI WGTACW 2 cut(s) 134, 413
TfiI GAWTC 2 cut(s) 364, 428
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 17, 195, 486
TspRI CASTG 1 cut(s) 93
Tth111I GACNNNGTC 1 cut(s) 287
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.