Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

8723549 .. 8723962

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGAGAACCCATTACTCATTCATGGAAGAAAACCCTAACCCTAACAACAATCTTATTCACATGAGCAACCAACAGAATCCTGCATTTTCCGGAAAAAGAAACAAACACAGTGACGCGATCGATCTTGTGGGATCACAAAGCATGCAAGCTGTCGGCGGATATGTTAGTATTCCTCAGATGGATAACTTAGGGCATGAGAGACTTAAGAGGCACCAAGAGGAAGTGGCCGGCCACGTGGTGATACCGGATTCATGGGGTCAGGAGGAGTTGCTCAAGGATTGGATCGACTACTCTCCCTTTGATGCGTTGTTAGTGCCAGAAGGACTCACTTCAGCTCGTGAAGCACTTGCTATGGAGGGACGTCGAGCAAATACTTCCCAAGGAGTGCTGAGGATAGAGAGCAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.43

Weight (kDa)

5.83

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	396
AatII	GACGTC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	213
AccII	CGCG	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	92
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	142, 293
AcoI	YGGCCR	2 cut(s)	228, 232
AcuI	CTGAAG	1 cut(s)	318
AcvI	CACGTG	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	364
AdeI	CACNNNGTG	1 cut(s)	241
AflII	CTTAAG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	152, 338
AluI	AGCT	2 cut(s)	152, 338
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	142, 293
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	2 cut(s)	228, 232
AsuHPI	GGTGA	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	339
BbrPI	CACGTG	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	392
BccI	CCATC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	196
BfrI	CTTAAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	2 cut(s)	92, 247
Bse118I	RCCGGY	1 cut(s)	230
BseAI	TCCGGA	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	191, 383
BseRI	GAGGAG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	230, 234
BshNI	GGYRCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	93, 231, 248
BslFI	GGGAC	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	230, 234
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	120, 124, 134, 285
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	230, 234
BspCNI	CTCAG	2 cut(s)	190, 384
BspDI	ATCGAT	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	215
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	142, 293
BspT107I	GGYRCC	1 cut(s)	213
BspTI	CTTAAG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	4 cut(s)	120, 124, 134, 285
BssNI	GRCGYC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	382
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	364
BstAFI	CTTAAG	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	146, 150, 232
BstDEI	CTNAG	3 cut(s)	177, 190, 392
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	4 cut(s)	123, 127, 137, 288
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	4 cut(s)	120, 124, 134, 285
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	148
BstUI	CGCG	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	230, 234
BsuTUI	ATCGAT	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	3 cut(s)	146, 150, 232
Cfr10I	RCCGGY	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	1 cut(s)	125
CviAII	CATG	5 cut(s)	25, 64, 145, 197, 255
CviJI	RGCY	4 cut(s)	152, 230, 234, 338
CviKI_1	RGCY	4 cut(s)	152, 230, 234, 338
DdeI	CTNAG	3 cut(s)	177, 190, 392
DpnI	GATC	4 cut(s)	122, 126, 136, 287
DpnII	GATC	4 cut(s)	120, 124, 134, 285
DraIII	CACNNNGTG	1 cut(s)	241
EaeI	YGGCCR	2 cut(s)	228, 232
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	5 cut(s)	28, 67, 148, 200, 258
FaiI	YATR	7 cut(s)	26, 65, 146, 165, 198, 256, 356
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	5 cut(s)	24, 63, 144, 196, 254
FseI	GGCCGGCC	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	230, 234
HapII	CCGG	3 cut(s)	93, 231, 248
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	5 cut(s)	28, 67, 148, 200, 258
HinfI	GANTC	3 cut(s)	79, 251, 327
HpaII	CCGG	3 cut(s)	93, 231, 248
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	93, 263, 341
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	237, 364
HpyCH4V	TGCA	2 cut(s)	86, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	177, 190, 392
HpySE526I	ACGT	2 cut(s)	237, 364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	5 cut(s)	28, 67, 148, 200, 258
Kpn2I	TCCGGA	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	120, 124, 134, 285
LpnPI	CCDG	7 cut(s)	96, 106, 244, 248, 261, 333, 391
LweI	GCATC	1 cut(s)	295
MaeII	ACGT	2 cut(s)	237, 364
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	4 cut(s)	122, 126, 136, 287
MboI	GATC	4 cut(s)	120, 124, 134, 285
MboII	GAAGA	2 cut(s)	16, 41
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	186, 204, 214, 259, 352, 387
MroI	TCCGGA	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	230
MseI	TTAA	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	3 cut(s)	93, 231, 248
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	344
NaeI	GCCGGC	1 cut(s)	232
NdeII	GATC	4 cut(s)	120, 124, 134, 285
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	5 cut(s)	28, 67, 148, 200, 258
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	148
PaqCI	CACCTGC	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	79, 251
Ple19I	CGATCG	1 cut(s)	123
PleI	GAGTC	1 cut(s)	321
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	238
PspCI	CACGTG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	123
RigI	GGCCGGCC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	120, 124, 134, 285
SchI	GAGTC	1 cut(s)	321
SetI	ASST	5 cut(s)	154, 240, 340, 367, 410
SfaNI	GCATC	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	206, 275
SmoI	CTYRAG	2 cut(s)	206, 275
SphI	GCATGC	1 cut(s)	148
SsiI	CCGC	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	2 cut(s)	240, 367
TaqI	TCGA	3 cut(s)	123, 288, 367
TfiI	GAWTC	2 cut(s)	79, 251
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	13, 17, 243
TspRI	CASTG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	206
XceI	RCATGY	1 cut(s)	148
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.