Rw5G027690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003000
Physical Location & Seq
Forward (+)
41102919 .. 41103781
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027690.1

Sequence Viewer

Length: 405 bp
ATGAAGAGAACCCACTACTCGTTGATGGAGGAAAAACCCAACAGTAATGTTAACAACACCACCAACCAGATCAAGGTTCCTGCATTCTCTGGGAAAAGAAGCAAACACTGCGGCGGCGTAGGCCACAACGAGCTTGTGGGGTTACATAACATGTCTGCGGCAGACATGAGCTCGGGACGCGAGAGGCTGAAGAAACACCGGGAGGAGGTTGCCGGTCATGTGATGATACCGGATTCGTGGGGGCAGGAGGAGCTGCTCAAGGAGTGGATCGATTACTCTCCGTTTGATGCGTTGCTGGTTCCGACAGGGCTCAGCTCGGCTCGTGAAGCACTTGCTAGGGAAGGACGTCGTCGAGCAAGTAACAATAATGCTCAAGGAGTCATGAGGATAGAGAGTAGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0023052 GO:0030522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080167 GO:0104004
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

9.3

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 349
AccII CGCG 1 cut(s) 180
AciI CCGC 3 cut(s) 111, 114, 158
AclWI GGATC 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 73, 205
AflIII ACRYGT 1 cut(s) 150
AluBI AGCT 4 cut(s) 133, 171, 253, 315
AluI AGCT 4 cut(s) 133, 171, 253, 315
Alw21I GWGCWC 1 cut(s) 173
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 172
BanII GRGCYC 2 cut(s) 173, 312
BauI CACGAG 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 336
BisI GCNGC 4 cut(s) 112, 115, 159, 254
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 4 cut(s) 113, 116, 160, 255
Bme1390I CCNGG 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 78, 300
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 277
Bpu1102I GCTNAGC 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 242, 357
BpuMI CCSGG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 205
Bse118I RCCGGY 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 73, 205
BseMII CTCAG 1 cut(s) 325
BseRI GAGGAG 2 cut(s) 218, 263
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 3 cut(s) 199, 213, 230
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 73, 205
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 173, 312
Bsp143I GATC 2 cut(s) 69, 267
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 3 cut(s) 111, 114, 158
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 324
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 78, 300
BspPI GGATC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssMI GATC 2 cut(s) 69, 267
BssNI GRCGYC 1 cut(s) 346
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 311
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 2 cut(s) 72, 270
BstMBI GATC 2 cut(s) 69, 267
BstMWI GCNNNNNNNGC 5 cut(s) 108, 120, 177, 250, 326
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 198
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 1 cut(s) 123
BsuTUI ATCGAT 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
CciI TCATGA 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 186
CviAII CATG 4 cut(s) 151, 166, 218, 382
CviJI RGCY 8 cut(s) 123, 133, 171, 187, 253, 310, 315, 320
CviKI_1 RGCY 8 cut(s) 123, 133, 171, 187, 253, 310, 315, 320
DdeI CTNAG 1 cut(s) 311
DpnI GATC 2 cut(s) 71, 269
DpnII GATC 2 cut(s) 69, 267
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 2 cut(s) 173, 312
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 171
EcoT38I GRGCYC 2 cut(s) 173, 312
FaeI CATG 4 cut(s) 154, 169, 221, 385
FaiI YATR 5 cut(s) 147, 152, 167, 219, 383
FaqI GGGAC 1 cut(s) 189
FatI CATG 4 cut(s) 150, 165, 217, 381
Fnu4HI GCNGC 4 cut(s) 112, 115, 159, 254
FriOI GRGCYC 2 cut(s) 173, 312
Fsp4HI GCNGC 4 cut(s) 112, 115, 159, 254
FspBI CTAG 1 cut(s) 336
GluI GCNGC 4 cut(s) 112, 115, 159, 254
HaeIII GGCC 1 cut(s) 123
HapII CCGG 3 cut(s) 199, 213, 230
HgaI GACGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 4 cut(s) 154, 169, 221, 385
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 2 cut(s) 233, 378
HpaI GTTAAC 1 cut(s) 52
HpaII CCGG 3 cut(s) 199, 213, 230
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 174, 323, 382
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 2 cut(s) 351, 354
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 120, 177, 250, 326
HpyF3I CTNAG 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 346
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 4 cut(s) 154, 169, 221, 385
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 69, 267
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 9 cut(s) 75, 80, 93, 212, 226, 230, 243, 281, 291
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 2 cut(s) 141, 359
MalI GATC 2 cut(s) 71, 269
MboI GATC 2 cut(s) 69, 267
MboII GAAGA 2 cut(s) 16, 202
MhlI GDGCHC 2 cut(s) 173, 312
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 6 cut(s) 22, 177, 196, 199, 241, 378
MseI TTAA 1 cut(s) 51
MspI CCGG 3 cut(s) 199, 213, 230
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 83
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 5 cut(s) 108, 120, 177, 250, 326
NciI CCSGG 1 cut(s) 200
NdeII GATC 2 cut(s) 69, 267
NlaIII CATG 4 cut(s) 154, 169, 221, 385
NlaIV GGNNCC 2 cut(s) 78, 300
NmeAIII GCCGAG 1 cut(s) 296
NspI RCATGY 1 cut(s) 154
PagI TCATGA 1 cut(s) 381
PciI ACATGT 1 cut(s) 150
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 348
PkrI GCNGC 4 cut(s) 113, 116, 160, 255
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PscI ACATGT 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 78, 300
PsyI GACNNNGTC 1 cut(s) 348
SacI GAGCTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 4 cut(s) 112, 115, 159, 254
Sau3AI GATC 2 cut(s) 69, 267
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 173, 312
SetI ASST 8 cut(s) 78, 135, 173, 210, 255, 317, 349, 401
SfaNI GCATC 1 cut(s) 277
SmlI CTYRAG 2 cut(s) 257, 372
SmoI CTYRAG 2 cut(s) 257, 372
SsiI CCGC 3 cut(s) 111, 114, 158
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 349
TaqI TCGA 2 cut(s) 270, 352
TauI GCSGC 3 cut(s) 114, 117, 161
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 113
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 113
Tth111I GACNNNGTC 1 cut(s) 348
XceI RCATGY 1 cut(s) 154
XspI CTAG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.