AT3G56970

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003398
Physical Location & Seq
Reverse (-)
21084035 .. 21085245
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56970.1

Sequence Viewer

Length: 762 bp
ATGTGTGCATTAGTCCCTTCATTTTTCACAAACTTCGGTTGGCCGTCAACGAATCAATACGAAAGCTATTACGGTGCCGGAGATAACCTAAATAACGGCACATTTCTTGAATTGACGGTACCACAGACTTATGAAGTGACTCATCATCAGAATAGCTTGGGAGTATCTGTTTCGTCAGAAGGAAATGAGATAGACAACAATCCGGTTGTGGTCAAGAAGCTTAATCACAATGCTAGTGAACGTGACCGACGCAAGAAGATCAACACTTTGTTCTCATCTCTCCGTTCATGTCTTCCAGCTTCTGATCAATCGAAGAAGCTAAGTATTCCTGAAACGGTTTCAAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAGGCTAATACAAAAGAAGGAAGAAATTTTGGTACGAGTATCGGGTCAAAGAGACTTTGAGCTTTACGATAAGCAGCAACCAAAGGCGGTCGCGAGTTATCTCTCAACGGTTTCTGCCACTAGGCTTGGTGACAACGAAGTGATGGTCCAAGTCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATGTGTTGGGTGGGATAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCATCAAGATCTCAAGGAGAGAGGCTCTTCTACACTTTGCATCTTCAAGTGGAGAATATGGATGATTACAAGATTAATTGCGAAGAATTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACTCGTTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

253

Amino Acids

28.71

Weight (kDa)

5.63

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 72 - 124 9.1e-16 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 2 cut(s) 74, 118
AccII CGCG 1 cut(s) 476
AciI CCGC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 1 cut(s) 408
AfaI GTAC 5 cut(s) 120, 356, 417, 728, 734
AgsI TTSAA 3 cut(s) 110, 342, 668
AluBI AGCT 8 cut(s) 66, 156, 220, 299, 319, 348, 367, 445
AluI AGCT 8 cut(s) 66, 156, 220, 299, 319, 348, 367, 445
Alw26I GTCTC 2 cut(s) 429, 541
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 367, 457
ApoI RAATTY 1 cut(s) 408
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
AseI ATTAAT 1 cut(s) 696
Asp718I GGTACC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 524
AvaII GGWCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 74, 118
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 354, 469
BccI CCATC 2 cut(s) 520, 590
BceAI ACGGC 2 cut(s) 28, 112
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 429, 541
BfaI CTAG 3 cut(s) 234, 504, 760
BglII AGATCT 1 cut(s) 629
BisI GCNGC 2 cut(s) 368, 458
BlsI GCNGC 2 cut(s) 369, 459
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 2 cut(s) 76, 120
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpuEI CTTGAG 1 cut(s) 618
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
BseGI GGATG 3 cut(s) 619, 688, 726
BseXI GCAGC 2 cut(s) 354, 469
Bsh1236I CGCG 1 cut(s) 476
Bsh1285I CGRYCG 1 cut(s) 474
BshFI GGCC 1 cut(s) 43
BshNI GGYRCC 2 cut(s) 74, 118
BsiEI CGRYCG 1 cut(s) 474
BsiSI CCGG 2 cut(s) 78, 203
BsmAI GTCTC 2 cut(s) 429, 541
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 3 cut(s) 258, 304, 629
Bsp68I TCGCGA 1 cut(s) 476
BspACI CCGC 1 cut(s) 470
BspANI GGCC 1 cut(s) 43
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 2 cut(s) 76, 120
BspQI GCTCTTC 1 cut(s) 653
BspT107I GGYRCC 2 cut(s) 74, 118
BssMI GATC 3 cut(s) 258, 304, 629
Bst4CI ACNGT 4 cut(s) 74, 118, 337, 493
Bst6I CTCTTC 2 cut(s) 377, 653
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 3 cut(s) 619, 688, 726
BstFNI CGCG 1 cut(s) 476
BstKTI GATC 3 cut(s) 261, 307, 632
BstMAI GTCTC 2 cut(s) 429, 541
BstMBI GATC 3 cut(s) 258, 304, 629
BstMCI CGRYCG 1 cut(s) 474
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 2 cut(s) 354, 469
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 3 cut(s) 619, 688, 726
BtuMI TCGCGA 1 cut(s) 476
CaiI CAGNNNCTG 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 529
CseI GACGC 1 cut(s) 258
Csp6I GTAC 5 cut(s) 119, 355, 416, 727, 733
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviAII CATG 1 cut(s) 288
CviQI GTAC 5 cut(s) 119, 355, 416, 727, 733
DdeI CTNAG 1 cut(s) 320
DpnI GATC 3 cut(s) 260, 306, 631
DpnII GATC 3 cut(s) 258, 304, 629
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 377, 653
EarI CTCTTC 2 cut(s) 377, 653
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 529
EcoRV GATATC 1 cut(s) 567
FaeI CATG 1 cut(s) 291
FaiI YATR 5 cut(s) 132, 289, 359, 555, 680
FatI CATG 1 cut(s) 287
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 368, 458
FokI GGATG 3 cut(s) 626, 695, 733
Fsp4HI GCNGC 2 cut(s) 368, 458
FspBI CTAG 3 cut(s) 234, 504, 760
GluI GCNGC 2 cut(s) 368, 458
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 78, 203
HgaI GACGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 291
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 3 cut(s) 52, 139, 550
HpaII CCGG 2 cut(s) 78, 203
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 2 cut(s) 48, 239
Hpy188I TCNGA 3 cut(s) 150, 178, 304
Hpy188III TCNNGA 5 cut(s) 107, 214, 329, 475, 627
Hpy8I GTNNAC 2 cut(s) 48, 239
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 27, 173, 394
HpyCH4III ACNGT 4 cut(s) 74, 118, 337, 493
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 8, 370, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 1 cut(s) 291
KpnI GGTACC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 258, 304, 629
LguI GCTCTTC 1 cut(s) 653
LpnPI CCDG 5 cut(s) 91, 216, 309, 342, 375
Lsp1109I GCAGC 2 cut(s) 354, 469
LweI GCATC 1 cut(s) 670
MaeI CTAG 3 cut(s) 234, 504, 760
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 136, 242, 512
MalI GATC 3 cut(s) 260, 306, 631
MboI GATC 3 cut(s) 258, 304, 629
MflI RGATCY 1 cut(s) 629
MluCI AATT 4 cut(s) 110, 408, 697, 707
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 378, 636
MseI TTAA 5 cut(s) 222, 350, 696, 710, 756
MspI CCGG 2 cut(s) 78, 203
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 3 cut(s) 258, 304, 629
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 2 cut(s) 76, 120
NmuCI GTSAC 3 cut(s) 136, 242, 512
NruI TCGCGA 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 653
PfeI GAWTC 2 cut(s) 52, 550
PkrI GCNGC 2 cut(s) 369, 459
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 696
PspN4I GGNNCC 2 cut(s) 76, 120
PspPI GGNCC 1 cut(s) 529
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 629
RruI TCGCGA 1 cut(s) 476
RsaI GTAC 5 cut(s) 120, 356, 417, 728, 734
RsaNI GTAC 5 cut(s) 119, 355, 416, 727, 733
SapI GCTCTTC 1 cut(s) 653
SaqAI TTAA 5 cut(s) 222, 350, 696, 710, 756
SatI GCNGC 2 cut(s) 368, 458
Sau3AI GATC 3 cut(s) 258, 304, 629
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 1 cut(s) 133
SfaNI GCATC 1 cut(s) 670
SinI GGWCC 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 4 cut(s) 110, 408, 697, 707
SsiI CCGC 1 cut(s) 470
SspMI CTAG 3 cut(s) 234, 504, 760
TaaI ACNGT 4 cut(s) 74, 118, 337, 493
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 311, 563
TaqII GACCGA 1 cut(s) 261
TasI AATT 4 cut(s) 110, 408, 697, 707
TatI WGTACW 2 cut(s) 354, 726
TfiI GAWTC 2 cut(s) 52, 550
Tru1I TTAA 5 cut(s) 222, 350, 696, 710, 756
Tru9I TTAA 5 cut(s) 222, 350, 696, 710, 756
TseFI GTSAC 3 cut(s) 136, 242, 512
TseI GCWGC 2 cut(s) 367, 457
Tsp45I GTSAC 3 cut(s) 136, 242, 512
TspDTI ATGAA 5 cut(s) 9, 147, 276, 542, 609
TspGWI ACGGA 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 529
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 1 cut(s) 408
XspI CTAG 3 cut(s) 234, 504, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.