Prupe.7G039800_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0003398
Physical Location & Seq
Reverse (-)
7360331 .. 7361719
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G039800.1

Sequence Viewer

Length: 729 bp
ATGCTAGCTTTATCTCCTCCTTTGTTTTCAACGATTGCATGGCCTTCAGAGGATCTCTTAAGTCATGACCAGAACTACTTCTACAGAGACAGTTCCATTGATCAAAGTGCAGAGTCCTTCCTTCATATCCTTCCATCTCATCAGCCGCAAGTTGACCTCGATCGTTCCACTACTATCAGCGGCGATTACTCCGGCGTTTCCACAATGGCGAAGAAGCTTAACCATAATGCTAGCGAGCGTGACCGTCGCAAGAAGATGAACAGCTTGTATTCCTCATTGCGTTCACTGCTTCCTGTCGATCAAGGGAAAAAATTAAGCATTCCGAATACAATTTCGCACGTGCTGAAATACATACCAGAGCTTCAAAAGCTAGTGGAGGGATTAATTCGAAAGAGGGGGGAGCTCTTATCAAGAGCTTGTAAGCAAGAAGCTGCAATGCATGAGGAGAAGCGAATAAAAAGCACAGCTCGGAGCTCATCATCTGCCGTTTCAACCTATCGGCTTAGTGATAGAGCAGTAGCAATTCAAATATCTACCTTGAAGACCCACAACAATCTATTGTCTGAGATATTGCTAAATTTGGAGGAGGAGGGGCTTCAAGTTCTAAATGCTTCTTCCTTCCAGTCATCTGGAGGGAGGGTCTTCTATAATATACATCTTCAGGTGGAAAGAGCTGACAGATTAGAATGCAAGAATTTAAGCGAGAAGCTCATGTCCTTCTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

243

Amino Acids

27.31

Weight (kDa)

8.98

Isoelectric Point (pI)

70.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 146, 180
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 2 cut(s) 577, 694
AcuI CTGAAG 2 cut(s) 30, 644
AcvI CACGTG 1 cut(s) 340
AflII CTTAAG 1 cut(s) 58
AgsI TTSAA 6 cut(s) 30, 365, 492, 527, 541, 599
Alw21I GWGCWC 2 cut(s) 405, 476
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 577, 694
AseI ATTAAT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 388
AsuNHI GCTAGC 2 cut(s) 4, 230
BanII GRGCYC 2 cut(s) 405, 476
BbrPI CACGTG 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 548, 634
Bbv12I GWGCWC 2 cut(s) 405, 476
BbvI GCAGC 1 cut(s) 418
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 470
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 3 cut(s) 5, 231, 371
BfmI CTRYAG 1 cut(s) 82
BfrI CTTAAG 1 cut(s) 58
BisI GCNGC 3 cut(s) 146, 181, 432
BlsI GCNGC 3 cut(s) 147, 182, 433
BmtI GCTAGC 2 cut(s) 8, 234
BpiI GAAGAC 2 cut(s) 548, 634
BpmI CTGGAG 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bse1I ACTGG 1 cut(s) 622
Bse3DI GCAATG 2 cut(s) 275, 441
BseMI GCAATG 2 cut(s) 275, 441
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 4 cut(s) 6, 458, 599, 602
BseXI GCAGC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 405, 476
BsiSI CCGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 2 cut(s) 318, 692
BsnI GGCC 1 cut(s) 43
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 405, 476
Bsp143I GATC 4 cut(s) 52, 100, 160, 298
BspACI CCGC 2 cut(s) 146, 180
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 556
BspHI TCATGA 1 cut(s) 64
BspOI GCTAGC 2 cut(s) 8, 234
BspPI GGATC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 388
BspTI CTTAAG 1 cut(s) 58
BsrDI GCAATG 2 cut(s) 275, 441
BsrI ACTGG 1 cut(s) 622
BssMI GATC 4 cut(s) 52, 100, 160, 298
Bst4CI ACNGT 2 cut(s) 92, 245
BstAFI CTTAAG 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 340
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 3 cut(s) 6, 232, 236
BstDEI CTNAG 2 cut(s) 503, 564
BstKTI GATC 4 cut(s) 55, 103, 163, 301
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 4 cut(s) 52, 100, 160, 298
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 286, 367
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 2 cut(s) 548, 634
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 629
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 284
Cac8I GCNNGC 3 cut(s) 6, 232, 236
CciI TCATGA 1 cut(s) 64
CviAII CATG 4 cut(s) 39, 65, 440, 712
DdeI CTNAG 2 cut(s) 503, 564
DpnI GATC 4 cut(s) 54, 102, 162, 300
DpnII GATC 4 cut(s) 52, 100, 160, 298
Ecl136II GAGCTC 2 cut(s) 403, 474
Eco24I GRGCYC 2 cut(s) 405, 476
Eco53kI GAGCTC 2 cut(s) 403, 474
Eco57I CTGAAG 2 cut(s) 30, 644
Eco72I CACGTG 1 cut(s) 340
EcoICRI GAGCTC 2 cut(s) 403, 474
EcoT22I ATGCAT 1 cut(s) 441
EcoT38I GRGCYC 2 cut(s) 405, 476
FaeI CATG 4 cut(s) 42, 68, 443, 715
FatI CATG 4 cut(s) 38, 64, 439, 711
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 146, 181, 432
FriOI GRGCYC 2 cut(s) 405, 476
Fsp4HI GCNGC 3 cut(s) 146, 181, 432
FspBI CTAG 3 cut(s) 5, 231, 371
GluI GCNGC 3 cut(s) 146, 181, 432
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 192
Hin1II CATG 4 cut(s) 42, 68, 443, 715
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 154, 284
Hpy188I TCNGA 4 cut(s) 49, 324, 471, 565
Hpy188III TCNNGA 3 cut(s) 65, 411, 630
Hpy8I GTNNAC 2 cut(s) 154, 284
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 6 cut(s) 54, 127, 131, 140, 628, 727
HpyCH4III ACNGT 2 cut(s) 92, 245
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 5 cut(s) 38, 110, 434, 439, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 367
HpyF3I CTNAG 2 cut(s) 503, 564
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 4 cut(s) 42, 68, 443, 715
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 52, 100, 160, 298
LmnI GCTCC 2 cut(s) 400, 471
LpnPI CCDG 7 cut(s) 83, 205, 306, 369, 615, 635, 647
Lsp1109I GCAGC 1 cut(s) 418
MaeI CTAG 3 cut(s) 5, 231, 371
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 54, 102, 162, 300
MboI GATC 4 cut(s) 52, 100, 160, 298
MboII GAAGA 6 cut(s) 223, 265, 553, 606, 634, 650
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 405, 476
MluCI AATT 6 cut(s) 311, 330, 384, 522, 577, 694
MlyI GAGTC 1 cut(s) 122
Mph1103I ATGCAT 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 5 cut(s) 59, 219, 314, 383, 698
MspA1I CMGCKG 1 cut(s) 180
MspCI CTTAAG 1 cut(s) 58
MspI CCGG 1 cut(s) 192
Mva1269I GAATGC 2 cut(s) 318, 692
MwoI GCNNNNNNNGC 2 cut(s) 286, 367
NdeII GATC 4 cut(s) 52, 100, 160, 298
NheI GCTAGC 2 cut(s) 4, 230
NlaIII CATG 4 cut(s) 42, 68, 443, 715
NmuCI GTSAC 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 441
NspV TTCGAA 1 cut(s) 388
PagI TCATGA 1 cut(s) 64
PctI GAATGC 2 cut(s) 318, 692
PdmI GAANNNNTTC 1 cut(s) 77
PkrI GCNGC 3 cut(s) 147, 182, 433
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 1 cut(s) 121
PmaCI CACGTG 1 cut(s) 340
PmlI CACGTG 1 cut(s) 340
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 340
PshBI ATTAAT 1 cut(s) 383
Psp124BI GAGCTC 2 cut(s) 405, 476
PspCI CACGTG 1 cut(s) 340
PsrI GAACNNNNNNTAC 2 cut(s) 65, 97
PsuI RGATCY 1 cut(s) 52
PvuI CGATCG 1 cut(s) 163
SacI GAGCTC 2 cut(s) 405, 476
SaqAI TTAA 5 cut(s) 59, 219, 314, 383, 698
SatI GCNGC 3 cut(s) 146, 181, 432
Sau3AI GATC 4 cut(s) 52, 100, 160, 298
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 2 cut(s) 405, 476
SfcI CTRYAG 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 6 cut(s) 311, 330, 384, 522, 577, 694
SsiI CCGC 2 cut(s) 146, 180
SspMI CTAG 3 cut(s) 5, 231, 371
SstI GAGCTC 2 cut(s) 405, 476
TaaI ACNGT 2 cut(s) 92, 245
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 159, 297, 388
TasI AATT 6 cut(s) 311, 330, 384, 522, 577, 694
TauI GCSGC 2 cut(s) 148, 183
Tru1I TTAA 5 cut(s) 59, 219, 314, 383, 698
Tru9I TTAA 5 cut(s) 59, 219, 314, 383, 698
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 113, 272
TspRI CASTG 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 58
VspI ATTAAT 1 cut(s) 383
XapI RAATTY 2 cut(s) 577, 694
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 3 cut(s) 5, 231, 371
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.