RchiOBHm_Chr1g0321521

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003398
Physical Location & Seq
Forward (+)
9045543 .. 9046435
893 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55156

Sequence Viewer

Length: 708 bp
ATGTTGGCTTTATCTCCTCCTCTGTTTTCAACAATTGGATGGCCTTTGGAGGATCATCCCATAAGTCATGACCACAACAATTATTTCTCAGCAGAATCATCGCTTCCTCATTTTCCTACAACTCTGCAGCCACAGTTTGATCAGCTTGATCACTCTACTGCAATCAACGGCGAGTCCAACATTTCTTCAGTGGATAAGAAGCTTAACCACAATGCTAGTGAGCGTGACCGCCACAAGAAGATCAACAACTTGTACTCATCACTACGTTCACTCGTTCCCGCAGATCATGCGAAAAGATTAAGCATTCCAGACACAGTTTCGCGGGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTAATTCAAAAAAGAGATGAGCTTTTATCGAAAATTTCTACGCAAGAAAATGTAATATTACAAGAGGAAAAGAAAGTAAAAAGCACAGCTTGGAGGAGTCGGAGCTCATTATCTGCTGTTTCAACAACTCGTCTTAGTGATGGTGAAGTTGCAATTCAAATATCCACAATTAAGTCCTCCCACAATTTCGTATCTCGGATTTTGCAGAGTCTGGAGGAGGATGGGCTTGAAATACTAAATGCTTCTTCCTTTGAGTCCTCTAGAGGGAGGGTCTTCTATAATTTACATCTCCAGGTAATTTTTTTTTCCCCGAACTCTCATTCATTTGTTTATACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

235

Amino Acids

26.56

Weight (kDa)

6.59

Isoelectric Point (pI)

59.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 66 - 117 1.8e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AciI CCGC 3 cut(s) 229, 279, 322
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 630
AgsI TTSAA 5 cut(s) 30, 374, 489, 524, 596
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 6 cut(s) 145, 202, 346, 388, 455, 471
AluI AGCT 6 cut(s) 145, 202, 346, 388, 455, 471
Alw21I GWGCWC 2 cut(s) 348, 473
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 577
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 127, 352
ApoI RAATTY 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 521
BanII GRGCYC 2 cut(s) 348, 473
BbsI GAAGAC 1 cut(s) 631
Bbv12I GWGCWC 2 cut(s) 348, 473
BbvI GCAGC 2 cut(s) 139, 364
BccI CCATC 3 cut(s) 33, 500, 581
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 659
BclI TGATCA 2 cut(s) 139, 148
BfaI CTAG 3 cut(s) 216, 627, 706
BfmI CTRYAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 128, 353
BlsI GCNGC 2 cut(s) 129, 354
Bme1390I CCNGG 1 cut(s) 659
BmrFI CCNGG 1 cut(s) 659
BpiI GAAGAC 1 cut(s) 631
BpmI CTGGAG 3 cut(s) 332, 599, 641
Bsc4I CCNNNNNNNGG 1 cut(s) 630
BseBI CCWGG 1 cut(s) 659
BseGI GGATG 3 cut(s) 44, 55, 592
BseLI CCNNNNNNNGG 1 cut(s) 630
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 4 cut(s) 6, 9, 475, 596
BseXI GCAGC 2 cut(s) 139, 364
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 348, 473
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 348, 473
Bsp143I GATC 5 cut(s) 52, 139, 148, 240, 283
BspACI CCGC 3 cut(s) 229, 279, 322
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 60
BssMI GATC 5 cut(s) 52, 139, 148, 240, 283
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 2 cut(s) 135, 316
BstAPI GCANNNNNTGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 88, 500
BstF5I GGATG 3 cut(s) 44, 55, 592
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 5 cut(s) 55, 142, 151, 243, 286
BstMBI GATC 5 cut(s) 52, 139, 148, 240, 283
BstMWI GCNNNNNNNGC 2 cut(s) 287, 352
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 1 cut(s) 125
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 139, 364
BstV2I GAAGAC 1 cut(s) 631
BsuRI GGCC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 44, 55, 592
BtsIMutI CAGTG 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 577
CciI TCATGA 1 cut(s) 67
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 68, 287
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 88, 500
DpnI GATC 5 cut(s) 54, 141, 150, 242, 285
DpnII GATC 5 cut(s) 52, 139, 148, 240, 283
Ecl136II GAGCTC 2 cut(s) 346, 471
Eco24I GRGCYC 2 cut(s) 348, 473
Eco53kI GAGCTC 2 cut(s) 346, 471
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 2 cut(s) 346, 471
EcoRII CCWGG 1 cut(s) 657
EcoT38I GRGCYC 2 cut(s) 348, 473
FaeI CATG 2 cut(s) 71, 290
FaiI YATR 5 cut(s) 62, 69, 288, 645, 699
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 67, 286
FauI CCCGC 2 cut(s) 286, 315
FbaI TGATCA 2 cut(s) 139, 148
Fnu4HI GCNGC 2 cut(s) 128, 353
FokI GGATG 3 cut(s) 42, 51, 599
FriOI GRGCYC 2 cut(s) 348, 473
Fsp4HI GCNGC 2 cut(s) 128, 353
FspBI CTAG 3 cut(s) 216, 627, 706
GluI GCNGC 2 cut(s) 128, 353
GsuI CTGGAG 3 cut(s) 332, 599, 641
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 2 cut(s) 71, 290
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 5 cut(s) 95, 173, 463, 574, 620
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 468, 564
Hpy188III TCNNGA 5 cut(s) 68, 308, 341, 578, 627
Hpy8I GTNNAC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 135, 316
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 4 cut(s) 127, 161, 518, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 352
HpyF3I CTNAG 2 cut(s) 88, 500
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 71, 290
Ksp22I TGATCA 2 cut(s) 139, 148
Kzo9I GATC 5 cut(s) 52, 139, 148, 240, 283
LmnI GCTCC 2 cut(s) 351, 468
LpnPI CCDG 6 cut(s) 321, 354, 362, 563, 644, 671
Lsp1109I GCAGC 2 cut(s) 139, 364
MaeI CTAG 3 cut(s) 216, 627, 706
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 224
MalI GATC 5 cut(s) 54, 141, 150, 242, 285
MboI GATC 5 cut(s) 52, 139, 148, 240, 283
MboII GAAGA 4 cut(s) 177, 250, 603, 631
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 348, 473
MluCI AATT 9 cut(s) 33, 79, 369, 399, 519, 534, 550, 646, 663
MlyI GAGTC 4 cut(s) 182, 472, 583, 629
MmeI TCCRAC 2 cut(s) 201, 446
MseI TTAA 3 cut(s) 204, 299, 537
MspR9I CCNGG 1 cut(s) 659
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 287, 352
NdeII GATC 5 cut(s) 52, 139, 148, 240, 283
NlaIII CATG 2 cut(s) 71, 290
NmuCI GTSAC 1 cut(s) 224
PagI TCATGA 1 cut(s) 67
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 129, 354
PleI GAGTC 4 cut(s) 181, 471, 582, 628
PpsI GAGTC 4 cut(s) 181, 471, 582, 628
Psp124BI GAGCTC 2 cut(s) 348, 473
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PstI CTGCAG 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 577
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacI GAGCTC 2 cut(s) 348, 473
SaqAI TTAA 3 cut(s) 204, 299, 537
SatI GCNGC 2 cut(s) 128, 353
Sau3AI GATC 5 cut(s) 52, 139, 148, 240, 283
SchI GAGTC 4 cut(s) 182, 472, 583, 629
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 2 cut(s) 348, 473
SetI ASST 8 cut(s) 147, 204, 268, 348, 390, 457, 473, 663
SfcI CTRYAG 1 cut(s) 125
Sse9I AATT 9 cut(s) 33, 79, 369, 399, 519, 534, 550, 646, 663
SsiI CCGC 3 cut(s) 229, 279, 322
SspI AATATT 1 cut(s) 423
SspMI CTAG 3 cut(s) 216, 627, 706
SstI GAGCTC 2 cut(s) 348, 473
StyD4I CCNGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 135, 316
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 395
TasI AATT 9 cut(s) 33, 79, 369, 399, 519, 534, 550, 646, 663
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 204, 299, 537
Tru9I TTAA 3 cut(s) 204, 299, 537
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 127, 352
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 678
TspRI CASTG 1 cut(s) 195
XapI RAATTY 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 626
XspI CTAG 3 cut(s) 216, 627, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.