Rw6G015050

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003398
Physical Location & Seq
Forward (+)
28240978 .. 28242043
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015050.1

Sequence Viewer

Length: 663 bp
ATGTTGGCTTTATCTCCTCCTCTATTTTCAACAATTGGATGGCCCTTGGAGGATCATCCCATAAGTCATGACCATAACTATTTCTCAGCAGAATCATCTCTTCTTCATTTCCCTACAACTCTGCAGCCACAGTTTGATAAGCTTGATCACTCCACGCCATCCACCGCAATCAGCGGCGAGGGCAACAGTTCTTCAATGACTAAGAAGCTTAACCACAATGCTAGTGAGCGTGACCGCCGCAAGAAGATCAACAACTTGTACTCATCACTGCGTTCTCTCGTTCCCGCAGATCATGCGAAAAGATTAAGTATTCCAGCCACAGTTTCGCGGGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTAATTCAAAAAAGAGACGAGCTTTTGTCGAAAATTTCTAAGCAAGAAAATGTAATATTACAAGAGGAAAAGCAAGTAAAAAGCACAGCTCGGAGGAGTAGGAGCTTATTATCTGCTGTTTCAACAACCCGTCTTAGTGATAGTGAAGAGGATGGGCTTGAAATACTGAATGCTTCTTCTTTTGAGTCCTCTGGAGGGAGGGTCTTCTATAATTTACATCTCCAGGTAGATATGTTCCGTAGGTTGGAATGTGAGAATTTAAGCGAGAAGCTCATGTCCTTCTATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

220

Amino Acids

24.89

Weight (kDa)

7.11

Isoelectric Point (pI)

73.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 68 - 119 1e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 328
AciI CCGC 6 cut(s) 165, 174, 235, 238, 285, 328
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 2 cut(s) 405, 628
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 567, 616
AgsI TTSAA 5 cut(s) 30, 195, 380, 495, 533
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 7 cut(s) 142, 208, 352, 394, 461, 477, 643
AluI AGCT 7 cut(s) 142, 208, 352, 394, 461, 477, 643
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 124, 358
ApoI RAATTY 2 cut(s) 405, 628
AspS9I GGNCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 568
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 136, 370
BccI CCATC 3 cut(s) 33, 166, 518
BciT130I CCWGG 1 cut(s) 596
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 4 cut(s) 125, 175, 238, 359
BlsI GCNGC 4 cut(s) 126, 176, 239, 360
Bme1390I CCNGG 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 568
BpmI CTGGAG 3 cut(s) 338, 578, 585
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 567, 616
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 4 cut(s) 44, 55, 158, 529
BseLI CCNNNNNNNGG 2 cut(s) 567, 616
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 6, 9, 481
BseXI GCAGC 2 cut(s) 136, 370
Bsh1236I CGCG 1 cut(s) 328
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 567, 616
BsmAI GTCTC 1 cut(s) 381
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 384
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 4 cut(s) 52, 145, 246, 289
BspACI CCGC 6 cut(s) 165, 174, 235, 238, 285, 328
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 98
BspFNI CGCG 1 cut(s) 328
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 126
BspPI GGATC 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 52, 145, 246, 289
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 3 cut(s) 132, 188, 322
Bst6I CTCTTC 2 cut(s) 105, 513
BstAPI GCANNNNNTGC 1 cut(s) 293
BstDEI CTNAG 4 cut(s) 85, 201, 411, 506
BstF5I GGATG 4 cut(s) 44, 55, 158, 529
BstFNI CGCG 1 cut(s) 328
BstKTI GATC 4 cut(s) 55, 148, 249, 292
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 4 cut(s) 52, 145, 246, 289
BstMWI GCNNNNNNNGC 3 cut(s) 180, 293, 358
BstNI CCWGG 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 594
BstSFI CTRYAG 1 cut(s) 122
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 136, 370
BstV2I GAAGAC 1 cut(s) 568
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 4 cut(s) 44, 55, 158, 529
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 68, 293, 646
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 85, 201, 411, 506
DpnI GATC 4 cut(s) 54, 147, 248, 291
DpnII GATC 4 cut(s) 52, 145, 246, 289
Eam1104I CTCTTC 2 cut(s) 105, 513
EarI CTCTTC 2 cut(s) 105, 513
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 3 cut(s) 71, 296, 649
FaiI YATR 9 cut(s) 62, 69, 75, 294, 582, 605, 647, 657, 661
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 67, 292, 645
FauI CCCGC 2 cut(s) 292, 321
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 125, 175, 238, 359
FokI GGATG 4 cut(s) 42, 51, 145, 536
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 4 cut(s) 125, 175, 238, 359
FspBI CTAG 1 cut(s) 222
GluI GCNGC 4 cut(s) 125, 175, 238, 359
GsuI CTGGAG 3 cut(s) 338, 578, 585
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 3 cut(s) 71, 296, 649
HindIII AAGCTT 2 cut(s) 140, 206
HinfI GANTC 2 cut(s) 92, 557
Hpy188I TCNGA 1 cut(s) 465
Hpy188III TCNNGA 3 cut(s) 68, 347, 564
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 3 cut(s) 132, 188, 322
HpyCH4V TGCA 2 cut(s) 124, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 293, 358
HpyF3I CTNAG 4 cut(s) 85, 201, 411, 506
Hsp92II CATG 3 cut(s) 71, 296, 649
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 52, 145, 246, 289
LmnI GCTCC 2 cut(s) 357, 474
LpnPI CCDG 6 cut(s) 327, 360, 368, 549, 581, 608
Lsp1109I GCAGC 2 cut(s) 136, 370
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 230
MalI GATC 4 cut(s) 54, 147, 248, 291
MboI GATC 4 cut(s) 52, 145, 246, 289
MboII GAAGA 7 cut(s) 92, 95, 183, 256, 530, 540, 568
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 5 cut(s) 33, 375, 405, 583, 628
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 597
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 3 cut(s) 210, 305, 632
MspA1I CMGCKG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 596
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 547
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 3 cut(s) 180, 293, 358
NdeII GATC 4 cut(s) 52, 145, 246, 289
NlaIII CATG 3 cut(s) 71, 296, 649
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 661
PagI TCATGA 1 cut(s) 67
PctI GAATGC 1 cut(s) 547
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 4 cut(s) 126, 176, 239, 360
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 126
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 354
SaqAI TTAA 3 cut(s) 210, 305, 632
SatI GCNGC 4 cut(s) 125, 175, 238, 359
Sau3AI GATC 4 cut(s) 52, 145, 246, 289
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 354
SetI ASST 9 cut(s) 144, 210, 354, 396, 463, 479, 600, 617, 645
SfcI CTRYAG 1 cut(s) 122
Sse9I AATT 5 cut(s) 33, 375, 405, 583, 628
SsiI CCGC 6 cut(s) 165, 174, 235, 238, 285, 328
SspI AATATT 1 cut(s) 429
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 132, 188, 322
TaqI TCGA 1 cut(s) 401
TasI AATT 5 cut(s) 33, 375, 405, 583, 628
TatI WGTACW 1 cut(s) 258
TauI GCSGC 2 cut(s) 177, 240
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 3 cut(s) 210, 305, 632
Tru9I TTAA 3 cut(s) 210, 305, 632
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 2 cut(s) 124, 358
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 1 cut(s) 273
XapI RAATTY 2 cut(s) 405, 628
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.