Rorug06G0057100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003398
Physical Location & Seq
Forward (+)
7770429 .. 7771041
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0057100.1

Sequence Viewer

Length: 321 bp
ATGGAAGGGTTGCTTCCCCTTCTATACCATGCCATCAAGAAGCGAAGATCAAAACACAAGCACAGATGCTTTTCGGAGAGCAATTCAAAAAGTAGCTACCGTCTCCTCGGTTGTGGCCAGGACCTAACCTTGGAAGGCTTGTCTCATTGTAAAAAAGGATCCGAGTTCCAACCTCTGGTCATTGCTGAATTATTAGAGCAGCGATCCGCACTTGACTTTAATCACTCGTGTAGCTACGAGGAAGAAGATGGTGTTTCTGCGGGGGTTCCTTTTGTGCCAAGTTCCTCAAAAGATAGGTTTCTATCCATGCGAAACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

8.39

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 2 cut(s) 207, 260
AclWI GGATC 3 cut(s) 153, 166, 198
AcoI YGGCCR 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 130, 175
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 96, 234
AluI AGCT 2 cut(s) 96, 234
Alw26I GTCTC 2 cut(s) 107, 147
AlwI GGATC 3 cut(s) 153, 166, 198
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 121
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 158
BauI CACGAG 1 cut(s) 226
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 41, 242
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 107, 147
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 160, 267
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 106, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 175
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 106, 129
BseLI CCNNNNNNNGG 2 cut(s) 130, 175
BseMI GCAATG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 130, 175
BsmAI GTCTC 2 cut(s) 107, 147
BsmBI CGTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 47, 158, 203
BspACI CCGC 2 cut(s) 207, 260
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 160, 267
BspPI GGATC 3 cut(s) 153, 166, 198
BsrDI GCAATG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 106, 129
BssMI GATC 3 cut(s) 47, 158, 203
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 101
BstKTI GATC 3 cut(s) 50, 161, 206
BstMAI GTCTC 2 cut(s) 107, 147
BstMBI GATC 3 cut(s) 47, 158, 203
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 2 cut(s) 29, 307
CviJI RGCY 4 cut(s) 96, 117, 138, 234
CviKI_1 RGCY 4 cut(s) 96, 117, 138, 234
DpnI GATC 3 cut(s) 49, 160, 205
DpnII GATC 3 cut(s) 47, 158, 203
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 32, 310
FaiI YATR 4 cut(s) 25, 30, 308, 319
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 2 cut(s) 28, 306
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 2 cut(s) 32, 310
Hpy188I TCNGA 2 cut(s) 76, 163
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 29, 128
HpyCH4III ACNGT 1 cut(s) 101
Hsp92II CATG 2 cut(s) 32, 310
Kzo9I GATC 3 cut(s) 47, 158, 203
LpnPI CCDG 3 cut(s) 104, 131, 161
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 56
MalI GATC 3 cut(s) 49, 160, 205
MboI GATC 3 cut(s) 47, 158, 203
MboII GAAGA 3 cut(s) 57, 254, 257
MflI RGATCY 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 2 cut(s) 82, 188
MluNI TGGCCA 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 116, 183, 232, 295
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
NdeII GATC 3 cut(s) 47, 158, 203
NlaIII CATG 2 cut(s) 32, 310
NlaIV GGNNCC 2 cut(s) 160, 267
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 201
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 160, 267
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 158
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 47, 158, 203
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 119
SetI ASST 7 cut(s) 98, 126, 131, 175, 236, 299, 318
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 121
Sse9I AATT 2 cut(s) 82, 188
SsiI CCGC 2 cut(s) 207, 260
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 101
TasI AATT 2 cut(s) 82, 188
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.