Rroxscaffold_4G00327570

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003398
Physical Location & Seq
Reverse (-)
60342928 .. 60344340
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327570.1

Sequence Viewer

Length: 723 bp
ATGTTGGCTTTATCTTCTCCTCTGTTTTCAACAATTGGATGGCCCTTGGAGGATCATCCCATAAGTCATGACCACAACAACTATTTCTCAGCAGAATCATCGCTTCCTCATTTTCCTACAACTCTGCAGCCACAGTTTGATCAGCTTGATCACTCTACTGCAATCAACGGCGAGTCCAACATTTCTTCAGTGGATAAGAAGCTTAACCACAATGCTAGTGAGCGTGACCGCCGCAACAAGATCAACAACTTGTACTCATCACTACGTTCACTCGTTCCCGCAGATCATGCGAAAAGATTAAGCATTCCAGCCACAGTTTCGCGGGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTAATTCAAAAAAGAGATGAGCTTTTATCGAAAATTTCTACGCAAGAAAATGTAATATTTCAAGAGGAAAAGAAAGTAAAAAGCACAGCTTGGAGGAGTCGGAGCTCATTATCTGCTGTTTCAACAACTCGTCTTAGTGATGGTGAAGTTGCAATTCAAATATCCACAATTAAGTCCTCCCACAATTACGTATCTCGGATTTTGCAGAGTCTGGAGGAGGATGGGCTTGAAATACTAAATGCTTCTTCCTTTGAGTCCTCTGGAGGGAGGGTCTTCTATAATTTACATCTCCAGGTAGATATGTTCTATAGGTTGGAATGCGAGAATTTAAGTGAGAGGCTGTCCTTCTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

240

Amino Acids

27.19

Weight (kDa)

6.14

Isoelectric Point (pI)

65.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 66 - 117 1.3e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AciI CCGC 4 cut(s) 229, 232, 279, 322
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 2 cut(s) 399, 691
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 630
AgsI TTSAA 6 cut(s) 30, 374, 428, 489, 524, 596
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 6 cut(s) 145, 202, 346, 388, 455, 471
AluI AGCT 6 cut(s) 145, 202, 346, 388, 455, 471
Alw21I GWGCWC 2 cut(s) 348, 473
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 577
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 127, 352
ApoI RAATTY 2 cut(s) 399, 691
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 521
BanII GRGCYC 2 cut(s) 348, 473
BbsI GAAGAC 1 cut(s) 631
Bbv12I GWGCWC 2 cut(s) 348, 473
BbvI GCAGC 2 cut(s) 139, 364
BccI CCATC 3 cut(s) 33, 500, 581
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 659
BclI TGATCA 2 cut(s) 139, 148
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 2 cut(s) 125, 673
BisI GCNGC 3 cut(s) 128, 232, 353
BlsI GCNGC 3 cut(s) 129, 233, 354
Bme1390I CCNGG 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 659
BpiI GAAGAC 1 cut(s) 631
BpmI CTGGAG 4 cut(s) 332, 599, 641, 648
BsaAI YACGTR 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 630
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 44, 55, 592
BseLI CCNNNNNNNGG 1 cut(s) 630
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 3 cut(s) 9, 475, 596
BseXI GCAGC 2 cut(s) 139, 364
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 348, 473
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 2 cut(s) 303, 689
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 348, 473
Bsp143I GATC 5 cut(s) 52, 139, 148, 240, 283
BspACI CCGC 4 cut(s) 229, 232, 279, 322
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 5 cut(s) 52, 139, 148, 240, 283
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 2 cut(s) 135, 316
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 556
BstDEI CTNAG 2 cut(s) 88, 500
BstF5I GGATG 3 cut(s) 44, 55, 592
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 5 cut(s) 55, 142, 151, 243, 286
BstMBI GATC 5 cut(s) 52, 139, 148, 240, 283
BstMWI GCNNNNNNNGC 2 cut(s) 287, 352
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 2 cut(s) 125, 673
BstSNI TACGTA 1 cut(s) 556
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 139, 364
BstV2I GAAGAC 1 cut(s) 631
BsuRI GGCC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 44, 55, 592
BtsIMutI CAGTG 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 577
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 68, 287, 720
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 88, 500
DpnI GATC 5 cut(s) 54, 141, 150, 242, 285
DpnII GATC 5 cut(s) 52, 139, 148, 240, 283
Ecl136II GAGCTC 2 cut(s) 346, 471
Eco105I TACGTA 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 348, 473
Eco53kI GAGCTC 2 cut(s) 346, 471
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 2 cut(s) 346, 471
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 2 cut(s) 348, 473
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 71, 290, 723
FaiI YATR 8 cut(s) 62, 69, 288, 645, 668, 675, 717, 721
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 378
FatI CATG 3 cut(s) 67, 286, 719
FauI CCCGC 2 cut(s) 286, 315
FbaI TGATCA 2 cut(s) 139, 148
Fnu4HI GCNGC 3 cut(s) 128, 232, 353
FokI GGATG 3 cut(s) 42, 51, 599
FriOI GRGCYC 2 cut(s) 348, 473
Fsp4HI GCNGC 3 cut(s) 128, 232, 353
FspBI CTAG 1 cut(s) 216
GluI GCNGC 3 cut(s) 128, 232, 353
GsuI CTGGAG 4 cut(s) 332, 599, 641, 648
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 3 cut(s) 71, 290, 723
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 5 cut(s) 95, 173, 463, 574, 620
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 468, 564
Hpy188III TCNNGA 5 cut(s) 68, 341, 428, 578, 627
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 721
HpyCH4III ACNGT 2 cut(s) 135, 316
HpyCH4IV ACGT 2 cut(s) 265, 555
HpyCH4V TGCA 5 cut(s) 127, 161, 518, 571, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 352
HpyF3I CTNAG 2 cut(s) 88, 500
HpySE526I ACGT 2 cut(s) 265, 555
Hsp92II CATG 3 cut(s) 71, 290, 723
Ksp22I TGATCA 2 cut(s) 139, 148
Kzo9I GATC 5 cut(s) 52, 139, 148, 240, 283
LmnI GCTCC 2 cut(s) 351, 468
LpnPI CCDG 7 cut(s) 321, 354, 362, 563, 612, 644, 671
Lsp1109I GCAGC 2 cut(s) 139, 364
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 265, 555
MaeIII GTNAC 1 cut(s) 224
MalI GATC 5 cut(s) 54, 141, 150, 242, 285
MboI GATC 5 cut(s) 52, 139, 148, 240, 283
MboII GAAGA 4 cut(s) 6, 177, 603, 631
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 348, 473
MluCI AATT 8 cut(s) 33, 369, 399, 519, 534, 550, 646, 691
MlyI GAGTC 4 cut(s) 182, 472, 583, 629
MmeI TCCRAC 3 cut(s) 201, 446, 660
Mph1103I ATGCAT 1 cut(s) 721
MseI TTAA 4 cut(s) 204, 299, 537, 695
MspR9I CCNGG 1 cut(s) 659
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 2 cut(s) 303, 689
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 287, 352
NdeII GATC 5 cut(s) 52, 139, 148, 240, 283
NlaIII CATG 3 cut(s) 71, 290, 723
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 721
PagI TCATGA 1 cut(s) 67
PctI GAATGC 2 cut(s) 303, 689
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 129, 233, 354
PleI GAGTC 4 cut(s) 181, 471, 582, 628
PpsI GAGTC 4 cut(s) 181, 471, 582, 628
Ppu21I YACGTR 1 cut(s) 556
Psp124BI GAGCTC 2 cut(s) 348, 473
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 577
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacI GAGCTC 2 cut(s) 348, 473
SaqAI TTAA 4 cut(s) 204, 299, 537, 695
SatI GCNGC 3 cut(s) 128, 232, 353
Sau3AI GATC 5 cut(s) 52, 139, 148, 240, 283
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 4 cut(s) 182, 472, 583, 629
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 2 cut(s) 348, 473
SfcI CTRYAG 2 cut(s) 125, 673
SnaBI TACGTA 1 cut(s) 556
Sse9I AATT 8 cut(s) 33, 369, 399, 519, 534, 550, 646, 691
SsiI CCGC 4 cut(s) 229, 232, 279, 322
SspI AATATT 1 cut(s) 423
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 2 cut(s) 348, 473
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 135, 316
TaiI ACGT 2 cut(s) 268, 558
TaqI TCGA 1 cut(s) 395
TasI AATT 8 cut(s) 33, 369, 399, 519, 534, 550, 646, 691
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 4 cut(s) 204, 299, 537, 695
Tru9I TTAA 4 cut(s) 204, 299, 537, 695
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 127, 352
Tsp45I GTSAC 1 cut(s) 224
TspRI CASTG 1 cut(s) 195
XapI RAATTY 2 cut(s) 399, 691
XspI CTAG 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.