FvH4_2g11650

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003398
Physical Location & Seq
Forward (+)
10174591 .. 10176131
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11650.t1

Sequence Viewer

Length: 735 bp
ATGTTGGCTTTATCTCCTCCTCTATTTTCAACAATTGGATGGCCCTTGGAAGATCATTCCATAAGTCATGACCACGACAACTATTACTCAGCAGAATCATCGCTTCTTCATTTCCCAACAACTCTGCAGCCACAGTTTGATCAGCTAGATCACTCCACGCCATCCACCGCAGTCAGCGGCGAGTCCAACATATCTTCAATGGTCAAGAAGCTCAACCACAATGCTAGTGAGCGTGACCGCCGCAAGAAGATCAACAACTTGTACTCATCACTGCGTTCTCTCGTTCCCGCTGATCATGCGAAAAGATTAAGCATTCCTGCCACAGTTTCACGGGTGCTGAAATACATTCCAGAGCTCCAACAGCAAGTAGAGGGACTAATTCAAAAAAGAGACGAGCTTTTATCAAACATGTCCAAGCAAGAAAATGTAATCTTACAAGAGGAAAAGCAGCTACAAAGCACAGCTCGGAGGAGTGGGAGCTCACTATCTGCTGTATCAACAAGTCGTCTTAGTGATACTGAACTTGCCATTCAAATATCCACGGTTAAGTCCACCCACAATATCATATCTCGGATTTTGCAAAGCCTGGAGGAGGATGGGCTTGAAATACTGAATGCTTCTACTTTCGAGTCCTCTGGAGGGAGGGTGTTCTATAATTTACATCTCCAGGTAGATATGTTCTACAGGTTGGAATGCGAGAATTTAAGCCATAAGCTCATGTCCTTCTATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

245

Amino Acids

27.54

Weight (kDa)

6.2

Isoelectric Point (pI)

77.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 69 - 120 1.2e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 168, 177, 238, 241, 288
AcsI RAATTY 1 cut(s) 700
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 592, 639
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 5 cut(s) 30, 198, 383, 533, 605
AjnI CCWGG 2 cut(s) 585, 666
AluBI AGCT 8 cut(s) 145, 211, 355, 397, 451, 464, 480, 715
AluI AGCT 8 cut(s) 145, 211, 355, 397, 451, 464, 480, 715
Alw21I GWGCWC 2 cut(s) 357, 482
Alw26I GTCTC 1 cut(s) 384
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 127, 448
ApoI RAATTY 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 42
BanII GRGCYC 2 cut(s) 357, 482
Bbv12I GWGCWC 2 cut(s) 357, 482
BbvI GCAGC 2 cut(s) 139, 460
BccI CCATC 3 cut(s) 33, 169, 590
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 2 cut(s) 587, 668
BclI TGATCA 2 cut(s) 139, 292
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 2 cut(s) 146, 225
BfmI CTRYAG 2 cut(s) 125, 682
BisI GCNGC 4 cut(s) 128, 178, 241, 449
BlsI GCNGC 4 cut(s) 129, 179, 242, 450
Bme1390I CCNGG 2 cut(s) 587, 668
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 2 cut(s) 587, 668
BpmI CTGGAG 3 cut(s) 608, 650, 657
BsaJI CCNNGG 2 cut(s) 45, 540
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 592, 639
BseBI CCWGG 2 cut(s) 587, 668
BseDI CCNNGG 2 cut(s) 45, 540
BseGI GGATG 3 cut(s) 44, 161, 601
BseLI CCNNNNNNNGG 2 cut(s) 592, 639
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 4 cut(s) 6, 9, 484, 605
BseXI GCAGC 2 cut(s) 139, 460
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 357, 482
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 2 cut(s) 592, 639
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 387
BsmI GAATGC 3 cut(s) 312, 619, 698
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 357, 482
Bsp143I GATC 5 cut(s) 52, 139, 148, 249, 292
BspACI CCGC 5 cut(s) 168, 177, 238, 241, 288
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 101
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 45, 540
BssMI GATC 5 cut(s) 52, 139, 148, 249, 292
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 587, 668
Bst4CI ACNGT 3 cut(s) 135, 325, 544
BstDEI CTNAG 2 cut(s) 88, 509
BstDSI CCRYGG 1 cut(s) 540
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 3 cut(s) 44, 161, 601
BstKTI GATC 5 cut(s) 55, 142, 151, 252, 295
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 5 cut(s) 52, 139, 148, 249, 292
BstMWI GCNNNNNNNGC 2 cut(s) 296, 361
BstNI CCWGG 2 cut(s) 587, 668
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 585, 666
BstSFI CTRYAG 2 cut(s) 125, 682
BstV1I GCAGC 2 cut(s) 139, 460
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 540
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 44, 161, 601
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 262
CviAII CATG 4 cut(s) 68, 296, 409, 718
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 88, 509
DpnI GATC 5 cut(s) 54, 141, 150, 251, 294
DpnII GATC 5 cut(s) 52, 139, 148, 249, 292
Ecl136II GAGCTC 2 cut(s) 355, 480
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 357, 482
Eco53kI GAGCTC 2 cut(s) 355, 480
EcoICRI GAGCTC 2 cut(s) 355, 480
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 585, 666
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 357, 482
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 4 cut(s) 71, 299, 412, 721
FaqI GGGAC 1 cut(s) 387
FatI CATG 4 cut(s) 67, 295, 408, 717
FauI CCCGC 1 cut(s) 295
FbaI TGATCA 2 cut(s) 139, 292
Fnu4HI GCNGC 4 cut(s) 128, 178, 241, 449
FokI GGATG 3 cut(s) 51, 148, 608
FriOI GRGCYC 2 cut(s) 357, 482
Fsp4HI GCNGC 4 cut(s) 128, 178, 241, 449
FspBI CTAG 2 cut(s) 146, 225
GluI GCNGC 4 cut(s) 128, 178, 241, 449
GsuI CTGGAG 3 cut(s) 608, 650, 657
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 4 cut(s) 71, 299, 412, 721
HinfI GANTC 3 cut(s) 95, 182, 629
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 2 cut(s) 468, 573
Hpy188III TCNNGA 4 cut(s) 68, 205, 350, 636
Hpy8I GTNNAC 1 cut(s) 552
HpyAV CCTTC 1 cut(s) 733
HpyCH4III ACNGT 3 cut(s) 135, 325, 544
HpyCH4V TGCA 2 cut(s) 127, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 361
HpyF3I CTNAG 2 cut(s) 88, 509
Hsp92II CATG 4 cut(s) 71, 299, 412, 721
Ksp22I TGATCA 2 cut(s) 139, 292
Kzo9I GATC 5 cut(s) 52, 139, 148, 249, 292
LmnI GCTCC 2 cut(s) 360, 477
LpnPI CCDG 8 cut(s) 330, 363, 572, 599, 621, 653, 670, 680
Lsp1109I GCAGC 2 cut(s) 139, 460
MaeI CTAG 2 cut(s) 146, 225
MaeIII GTNAC 1 cut(s) 233
MalI GATC 5 cut(s) 54, 141, 150, 251, 294
MboI GATC 5 cut(s) 52, 139, 148, 249, 292
MboII GAAGA 4 cut(s) 62, 98, 186, 259
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 357, 482
MluCI AATT 4 cut(s) 33, 378, 655, 700
MlyI GAGTC 2 cut(s) 191, 638
MmeI TCCRAC 3 cut(s) 210, 382, 669
MseI TTAA 3 cut(s) 308, 546, 704
MspA1I CMGCKG 2 cut(s) 177, 290
MspR9I CCNGG 2 cut(s) 587, 668
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 3 cut(s) 312, 619, 698
MvaI CCWGG 2 cut(s) 587, 668
MwoI GCNNNNNNNGC 2 cut(s) 296, 361
NdeII GATC 5 cut(s) 52, 139, 148, 249, 292
NlaIII CATG 4 cut(s) 71, 299, 412, 721
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 412
PagI TCATGA 1 cut(s) 67
PciI ACATGT 1 cut(s) 408
PctI GAATGC 3 cut(s) 312, 619, 698
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 4 cut(s) 129, 179, 242, 450
PleI GAGTC 2 cut(s) 190, 637
PpsI GAGTC 2 cut(s) 190, 637
PscI ACATGT 1 cut(s) 408
Psp124BI GAGCTC 2 cut(s) 357, 482
Psp6I CCWGG 2 cut(s) 585, 666
PspGI CCWGG 2 cut(s) 585, 666
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 129
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 2 cut(s) 357, 482
SaqAI TTAA 3 cut(s) 308, 546, 704
SatI GCNGC 4 cut(s) 128, 178, 241, 449
Sau3AI GATC 5 cut(s) 52, 139, 148, 249, 292
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 2 cut(s) 191, 638
ScrFI CCNGG 2 cut(s) 587, 668
SduI GDGCHC 2 cut(s) 357, 482
SfcI CTRYAG 2 cut(s) 125, 682
Sse9I AATT 4 cut(s) 33, 378, 655, 700
SsiI CCGC 5 cut(s) 168, 177, 238, 241, 288
SspMI CTAG 2 cut(s) 146, 225
SstI GAGCTC 2 cut(s) 357, 482
StyD4I CCNGG 2 cut(s) 585, 666
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 135, 325, 544
TaqI TCGA 1 cut(s) 627
TasI AATT 4 cut(s) 33, 378, 655, 700
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 180, 243
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 308, 546, 704
Tru9I TTAA 3 cut(s) 308, 546, 704
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 127, 448
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 276
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 1 cut(s) 700
XceI RCATGY 1 cut(s) 412
XspI CTAG 2 cut(s) 146, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.