Prupe.1G213700_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003398
Physical Location & Seq
Reverse (-)
22692526 .. 22693956
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G213700.1

Sequence Viewer

Length: 372 bp
ATGCTAGCTTTATCTCCTCCCTTGTTTTCAACCATTGCATGGCCTTCAGAGGATCTCTTAAGTCGTGATCAGAACTACTTCTACAGAGACAGTTCTATTGATCAAAGTGCAGAGTCCTTCCTTCATATCCTTCCGTCTCATCAGCCACACGTTGACCTCGATCGTTCCACTACTATTGGCGGCGATTACTCCGGCGTTTCCACAATGACGAAGAAGCTTAACCATAATGCTAGCGAGCGTGACCGTCGCAAGAAGATGAACAGCTTGTATTCCTCACTGCGTTCACTGCTTCCTGTCGATCAAGGGGTGGAAAAAGCTGACAGATTAGAATGTGAGAATTTAAGCGAGAAGCTCATGTCCATCTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

5.75

Isoelectric Point (pI)

69.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 39
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 39
AflII CTTAAG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 5 cut(s) 8, 217, 264, 317, 352
AluI AGCT 5 cut(s) 8, 217, 264, 317, 352
Alw26I GTCTC 2 cut(s) 81, 141
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 77
AsuNHI GCTAGC 2 cut(s) 4, 230
BccI CCATC 1 cut(s) 368
BclI TGATCA 2 cut(s) 67, 100
BcoDI GTCTC 2 cut(s) 81, 141
BfaI CTAG 2 cut(s) 5, 231
BfmI CTRYAG 1 cut(s) 82
BfrI CTTAAG 1 cut(s) 58
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmtI GCTAGC 2 cut(s) 8, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 6
BsgI GTGCAG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 2 cut(s) 81, 141
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 5 cut(s) 52, 67, 100, 160, 298
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 43
BspOI GCTAGC 2 cut(s) 8, 234
BspPI GGATC 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 33
BssMI GATC 5 cut(s) 52, 67, 100, 160, 298
Bst4CI ACNGT 2 cut(s) 92, 245
BstAFI CTTAAG 1 cut(s) 58
BstC8I GCNNGC 3 cut(s) 6, 232, 236
BstKTI GATC 5 cut(s) 55, 70, 103, 163, 301
BstMAI GTCTC 2 cut(s) 81, 141
BstMBI GATC 5 cut(s) 52, 67, 100, 160, 298
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 43
BtsI GCAGTG 2 cut(s) 275, 284
BtsIMutI CAGTG 2 cut(s) 275, 284
Cac8I GCNNGC 3 cut(s) 6, 232, 236
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 39, 355
CviJI RGCY 7 cut(s) 8, 43, 145, 217, 264, 317, 352
CviKI_1 RGCY 7 cut(s) 8, 43, 145, 217, 264, 317, 352
DpnI GATC 5 cut(s) 54, 69, 102, 162, 300
DpnII GATC 5 cut(s) 52, 67, 100, 160, 298
Eco57I CTGAAG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 2 cut(s) 42, 358
FaiI YATR 5 cut(s) 40, 126, 225, 356, 366
FatI CATG 2 cut(s) 38, 354
FbaI TGATCA 2 cut(s) 67, 100
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 2 cut(s) 5, 231
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 192
Hin1II CATG 2 cut(s) 42, 358
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 154, 284
Hpy188I TCNGA 2 cut(s) 49, 72
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 2 cut(s) 154, 284
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 4 cut(s) 54, 127, 131, 140
HpyCH4III ACNGT 2 cut(s) 92, 245
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 38, 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 42, 358
Ksp22I TGATCA 2 cut(s) 67, 100
Kzo9I GATC 5 cut(s) 52, 67, 100, 160, 298
LpnPI CCDG 2 cut(s) 205, 306
MaeI CTAG 2 cut(s) 5, 231
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 239
MalI GATC 5 cut(s) 54, 69, 102, 162, 300
MboI GATC 5 cut(s) 52, 67, 100, 160, 298
MboII GAAGA 2 cut(s) 223, 265
MflI RGATCY 1 cut(s) 52
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 4 cut(s) 27, 43, 167, 283
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 3 cut(s) 59, 219, 341
MspCI CTTAAG 1 cut(s) 58
MspI CCGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeII GATC 5 cut(s) 52, 67, 100, 160, 298
NheI GCTAGC 2 cut(s) 4, 230
NlaIII CATG 2 cut(s) 42, 358
NmuCI GTSAC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 182
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PsrI GAACNNNNNNTAC 2 cut(s) 65, 97
PsuI RGATCY 1 cut(s) 52
PvuI CGATCG 1 cut(s) 163
SaqAI TTAA 3 cut(s) 59, 219, 341
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 5 cut(s) 52, 67, 100, 160, 298
SchI GAGTC 1 cut(s) 122
SetI ASST 7 cut(s) 10, 153, 159, 219, 266, 319, 354
SfcI CTRYAG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 337
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 5, 231
TaaI ACNGT 2 cut(s) 92, 245
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 159, 297
TasI AATT 1 cut(s) 337
TauI GCSGC 1 cut(s) 183
Tru1I TTAA 3 cut(s) 59, 219, 341
Tru9I TTAA 3 cut(s) 59, 219, 341
TscAI CASTG 2 cut(s) 282, 291
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 113, 272
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 2 cut(s) 282, 291
Van91I CCANNNNNTGG 1 cut(s) 39
Vha464I CTTAAG 1 cut(s) 58
XapI RAATTY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 2 cut(s) 5, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.