Rorug01G0033200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003398
Physical Location & Seq
Reverse (-)
5636345 .. 5639087
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0033200.1

Sequence Viewer

Length: 417 bp
ATGAGCACCGATCAAGGCTCGGATATTGATCATTGGGTGAAGCAGAAGACAAGTGCTTTAGCTTTGAATACCTTTGAGCAAAAAGAAAATGCTCAGCTTCTTTTGCTGTTGATAAGCATGGAATTGGAAAGGTTTTGCTTATCACTGGTGAAGATCAATTTCTATGTTGACAGTCGCAAATATGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATTTGAAGAATAATGTTGCTGATCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAAGGTTCTCACCTAAAAATAAAGAAGCTCAGTTTTGTGCTGCTGTAGGTGGAGCTGGGAGCAGCACAGCAGGTCAAAAAGGCATGCCTGGTGCTCTAGCAGATATGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

138

Amino Acids

15.23

Weight (kDa)

9.57

Isoelectric Point (pI)

23.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 67, 253
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 4 cut(s) 62, 97, 332, 359
AluI AGCT 4 cut(s) 62, 97, 332, 359
Alw21I GWGCWC 2 cut(s) 8, 400
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 344, 366
AseI ATTAAT 1 cut(s) 294
AsuHPI GGTGA 4 cut(s) 49, 160, 214, 306
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 8, 400
BbvI GCAGC 2 cut(s) 331, 378
BciT130I CCWGG 1 cut(s) 393
BclI TGATCA 1 cut(s) 28
BfaI CTAG 2 cut(s) 209, 401
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 2 cut(s) 345, 367
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 2 cut(s) 346, 368
Bme1390I CCNGG 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 393
BseJI GATNNNNATC 1 cut(s) 27
BseMII CTCAG 2 cut(s) 107, 347
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 331, 378
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 8, 400
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 8, 400
Bsp143I GATC 4 cut(s) 10, 28, 153, 268
Bsp1720I GCTNAGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 106, 346
BspMI ACCTGC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 150
BssMI GATC 4 cut(s) 10, 28, 153, 268
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 93, 333
BstKTI GATC 4 cut(s) 13, 31, 156, 271
BstMBI GATC 4 cut(s) 10, 28, 153, 268
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 331, 378
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 389
CviAII CATG 2 cut(s) 118, 388
CviJI RGCY 7 cut(s) 18, 62, 97, 208, 285, 332, 359
CviKI_1 RGCY 7 cut(s) 18, 62, 97, 208, 285, 332, 359
DdeI CTNAG 2 cut(s) 93, 333
DpnI GATC 4 cut(s) 12, 30, 155, 270
DpnII GATC 4 cut(s) 10, 28, 153, 268
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 121, 391
FatI CATG 2 cut(s) 117, 387
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 345, 367
Fsp4HI GCNGC 2 cut(s) 345, 367
FspBI CTAG 2 cut(s) 209, 401
GluI GCNGC 2 cut(s) 345, 367
GsaI CCCAGC 1 cut(s) 363
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 2 cut(s) 121, 391
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HphI GGTGA 4 cut(s) 49, 160, 214, 306
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 93, 333
Hsp92II CATG 2 cut(s) 121, 391
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 4 cut(s) 10, 28, 153, 268
LmnI GCTCC 2 cut(s) 356, 363
LpnPI CCDG 5 cut(s) 131, 345, 360, 378, 405
Lsp1109I GCAGC 2 cut(s) 331, 378
MaeI CTAG 2 cut(s) 209, 401
MalI GATC 4 cut(s) 12, 30, 155, 270
MboI GATC 4 cut(s) 10, 28, 153, 268
MboII GAAGA 6 cut(s) 58, 163, 235, 238, 263, 265
MhlI GDGCHC 2 cut(s) 8, 400
MluCI AATT 2 cut(s) 122, 157
MnlI CCTC 2 cut(s) 198, 222
MseI TTAA 2 cut(s) 219, 294
MslI CAYNNNNRTG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 4 cut(s) 10, 28, 153, 268
NlaIII CATG 2 cut(s) 121, 391
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PkrI GCNGC 2 cut(s) 346, 368
PshBI ATTAAT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 2 cut(s) 219, 294
SatI GCNGC 2 cut(s) 345, 367
Sau3AI GATC 4 cut(s) 10, 28, 153, 268
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 2 cut(s) 8, 400
SfcI CTRYAG 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SphI GCATGC 1 cut(s) 391
Sse9I AATT 2 cut(s) 122, 157
SspMI CTAG 2 cut(s) 209, 401
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 173
TasI AATT 2 cut(s) 122, 157
Tru1I TTAA 2 cut(s) 219, 294
Tru9I TTAA 2 cut(s) 219, 294
TscAI CASTG 1 cut(s) 150
TseI GCWGC 2 cut(s) 344, 366
TspRI CASTG 1 cut(s) 150
VspI ATTAAT 1 cut(s) 294
XceI RCATGY 1 cut(s) 391
XspI CTAG 2 cut(s) 209, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.