Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003398

Physical Location & Seq

Genomic Coordinates Reverse (-)

18418335 .. 18418753

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 120 bp

ATGTTTTCAACATTGATAAAATCTAAACTGGTCTTCTTTAATTTACATCTTCAGATCGAAAGAAGTTATAGATTAGAATGTGAGAATTTAAGCGAGAAGCTCATGTCCTTCTATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

40

Amino Acids

4.73

Weight (kDa)

7.92

Isoelectric Point (pI)

71.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41240 AT2G41240 AT3G56970 AT3G56980
fragaria_vesca	FvH4_2g11650 FvH4_7g03950 FvH4_7g03950
malus_domestica	MD14G1086500.v1.1 MD14G1086600.v1.1
prunus_persica	Prupe.1G213700_v2.0.a1 Prupe.3G165100_v2.0.a1 Prupe.7G039800_v2.0.a1 Prupe.7G039900_v2.0.a1 Prupe.7G040100_v2.0.a1 Prupe.7G040100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321521 RchiOBHm_Chr6g0270891
rosa_laevigata	RLG00000013761 RLG00000030419 RLG00000030421
rosa_multiflora	Rmu_ssc0000474.1_g000012
rosa_roxburghii	Rroxscaffold_4G00327570 Rroxscaffold_7G00197510
rosa_rugosa	Rorug01G0033000 Rorug01G0033100 Rorug01G0033200 Rorug06G0057100
rosa_samantha	Rh1BG043100 Rh1BG043300 Rh1CG047600 Rh1DG052100 Rh6AG176600 Rh6BG180000 Rh6CG176100 Rh6DG168300
rosa_wichuraiana	Rw6G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	25
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	1 cut(s)	100
CviKI_1	RGCY	1 cut(s)	100
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	35
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	69, 104, 114
FatI	CATG	1 cut(s)	102
FspEI	CC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	1 cut(s)	14
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	25, 41
MluCI	AATT	2 cut(s)	40, 85
MseI	TTAA	2 cut(s)	39, 89
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	39, 89
Sau3AI	GATC	1 cut(s)	54
SetI	ASST	1 cut(s)	102
SgeI	CNNG	3 cut(s)	41, 106, 115
Sse9I	AATT	2 cut(s)	40, 85
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	40, 85
Tru1I	TTAA	2 cut(s)	39, 89
Tru9I	TTAA	2 cut(s)	39, 89
XapI	RAATTY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.