Prupe.7G039900_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0003398
Physical Location & Seq
Reverse (-)
7370010 .. 7371471
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G039900.1

Sequence Viewer

Length: 732 bp
ATGCTAGCTTTATCTCCTCCTGTGTTTTCAACCGTTGGATGGCCTTCAGAGGATCCCATAGGTTATGACCAAAACTACTTCTACAGAGACAGTTCCACTGATCAAACTGCAGAGTCGTTCCTTCATATCCTTCCATCTCAGCTGCCACAATTTGAGCTCGATCTTTCCACAACTATCAGCGGGGACAATTCCAGCGGTTCCACAATGGCTAAGAAGCTTAATCATAACGCTAGTGAGCGTGATCGTCGCAAGAAGATTAACAGCTTGTATTCTTCAATGCGTTCACTGCTTCCTGCAGATCAAGCGAAAAAATTAAGCATTCCGGATACAATTTCGCGAGTGCTGAAATACATACCGGAGCTCCAAAAGCAAGTGGAGGGACTAATTCGAAAGAGGGAGGAGCTTTTATCAAGAGCTTCTAATCAAGAAGATGTTATGCGGGAGGAGAAGGACATGAAAAGCACAGCTCGAAGCTCATCATTACCTGCTGTTTCAACCTATCGGCTTAGTGATAGAGAATTAGCAATTCAAATATCTACCTTGAAGACTCACAACAATCTATTATCTGAGATATTGCTAAATTTGGAGGAGGAGGGGCTTCAAGTACTAAATGCTTCTTTCTTGGAGTCATCTGGAGAGAGGGTCTTCTATAATTTACATCTTCAGGTGGAACGAAGTTACAGATTAGAATGCGAGAATTTAAGCGAGAAGCTCATGTCCTTCTATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

244

Amino Acids

27.67

Weight (kDa)

5.53

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccII CGCG 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 3 cut(s) 180, 195, 439
AclWI GGATC 2 cut(s) 47, 60
AcsI RAATTY 2 cut(s) 580, 697
AcuI CTGAAG 2 cut(s) 30, 647
AfaI GTAC 1 cut(s) 606
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 6 cut(s) 30, 276, 495, 530, 544, 602
Alw21I GWGCWC 2 cut(s) 159, 363
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 2 cut(s) 47, 60
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 2 cut(s) 580, 697
AsuII TTCGAA 1 cut(s) 388
AsuNHI GCTAGC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 52
BanII GRGCYC 2 cut(s) 159, 363
BbsI GAAGAC 2 cut(s) 551, 637
Bbv12I GWGCWC 2 cut(s) 159, 363
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 33, 142
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 5, 231
BfmI CTRYAG 3 cut(s) 82, 108, 294
BfuAI ACCTGC 1 cut(s) 493
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
BmcAI AGTACT 1 cut(s) 606
BmiI GGNNCC 2 cut(s) 54, 199
BmtI GCTAGC 1 cut(s) 8
BpiI GAAGAC 2 cut(s) 551, 637
BpmI CTGGAG 1 cut(s) 654
Bpu14I TTCGAA 1 cut(s) 388
BsaWI WCCGGW 2 cut(s) 322, 355
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 627, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 39
BseAI TCCGGA 1 cut(s) 322
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 152, 558
BseRI GAGGAG 5 cut(s) 6, 413, 458, 602, 605
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 159, 363
BsiSI CCGG 2 cut(s) 323, 356
BslFI GGGAC 2 cut(s) 197, 393
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 197, 393
BsmI GAATGC 2 cut(s) 318, 695
BsnI GGCC 1 cut(s) 43
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 159, 363
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 5 cut(s) 52, 100, 160, 241, 298
Bsp68I TCGCGA 1 cut(s) 337
BspACI CCGC 3 cut(s) 180, 195, 439
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 151, 559
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 54, 199
BspMAI CTGCAG 2 cut(s) 112, 298
BspMI ACCTGC 1 cut(s) 493
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 47, 60
BspT104I TTCGAA 1 cut(s) 388
BssMI GATC 5 cut(s) 52, 100, 160, 241, 298
Bst4CI ACNGT 2 cut(s) 34, 92
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 138, 210, 506, 567
BstF5I GGATG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 337
BstKTI GATC 5 cut(s) 55, 103, 163, 244, 301
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 5 cut(s) 52, 100, 160, 241, 298
BstMWI GCNNNNNNNGC 3 cut(s) 286, 302, 367
BstSFI CTRYAG 3 cut(s) 82, 108, 294
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 2 cut(s) 551, 637
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 2 cut(s) 96, 284
BtuMI TCGCGA 1 cut(s) 337
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 605
CviAII CATG 2 cut(s) 454, 715
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 4 cut(s) 138, 210, 506, 567
DpnI GATC 5 cut(s) 54, 102, 162, 243, 300
DpnII GATC 5 cut(s) 52, 100, 160, 241, 298
Ecl136II GAGCTC 2 cut(s) 157, 361
Eco24I GRGCYC 2 cut(s) 159, 363
Eco53kI GAGCTC 2 cut(s) 157, 361
Eco57I CTGAAG 2 cut(s) 30, 647
EcoICRI GAGCTC 2 cut(s) 157, 361
EcoT38I GRGCYC 2 cut(s) 159, 363
FaeI CATG 2 cut(s) 457, 718
FaqI GGGAC 2 cut(s) 197, 393
FatI CATG 2 cut(s) 453, 714
FauI CCCGC 2 cut(s) 173, 432
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 2 cut(s) 159, 363
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 2 cut(s) 5, 231
GluI GCNGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 323, 356
Hin1II CATG 2 cut(s) 457, 718
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 3 cut(s) 113, 547, 626
HpaII CCGG 2 cut(s) 323, 356
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 49, 568
Hpy188III TCNNGA 5 cut(s) 323, 336, 411, 425, 633
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 5 cut(s) 54, 131, 140, 442, 730
HpyCH4III ACNGT 2 cut(s) 34, 92
HpyCH4V TGCA 2 cut(s) 110, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 302, 367
HpyF3I CTNAG 4 cut(s) 138, 210, 506, 567
Hsp92II CATG 2 cut(s) 457, 718
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 52, 100, 160, 241, 298
LmnI GCTCC 3 cut(s) 358, 366, 400
LpnPI CCDG 8 cut(s) 33, 205, 306, 336, 369, 498, 618, 650
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 2 cut(s) 5, 231
MaeIII GTNAC 1 cut(s) 677
MalI GATC 5 cut(s) 54, 102, 162, 243, 300
MboI GATC 5 cut(s) 52, 100, 160, 241, 298
MboII GAAGA 6 cut(s) 264, 265, 440, 556, 637, 653
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 159, 363
MlyI GAGTC 3 cut(s) 122, 541, 635
MmeI TCCRAC 1 cut(s) 16
MroI TCCGGA 1 cut(s) 322
MseI TTAA 4 cut(s) 219, 258, 314, 701
MspA1I CMGCKG 3 cut(s) 142, 180, 195
MspI CCGG 2 cut(s) 323, 356
Mva1269I GAATGC 2 cut(s) 318, 695
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 286, 302, 367
NdeII GATC 5 cut(s) 52, 100, 160, 241, 298
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 457, 718
NlaIV GGNNCC 2 cut(s) 54, 199
NruI TCGCGA 1 cut(s) 337
NspV TTCGAA 1 cut(s) 388
PctI GAATGC 2 cut(s) 318, 695
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 3 cut(s) 121, 541, 634
PpsI GAGTC 3 cut(s) 121, 541, 634
Psp124BI GAGCTC 2 cut(s) 159, 363
PspN4I GGNNCC 2 cut(s) 54, 199
PstI CTGCAG 2 cut(s) 112, 298
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 142
RruI TCGCGA 1 cut(s) 337
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
SacI GAGCTC 2 cut(s) 159, 363
SaqAI TTAA 4 cut(s) 219, 258, 314, 701
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 5 cut(s) 52, 100, 160, 241, 298
ScaI AGTACT 1 cut(s) 606
SchI GAGTC 3 cut(s) 122, 541, 635
SduI GDGCHC 2 cut(s) 159, 363
SfcI CTRYAG 3 cut(s) 82, 108, 294
SfuI TTCGAA 1 cut(s) 388
SsiI CCGC 3 cut(s) 180, 195, 439
SspMI CTAG 2 cut(s) 5, 231
SstI GAGCTC 2 cut(s) 159, 363
TaaI ACNGT 2 cut(s) 34, 92
TaqI TCGA 3 cut(s) 159, 388, 469
TatI WGTACW 1 cut(s) 604
Tru1I TTAA 4 cut(s) 219, 258, 314, 701
Tru9I TTAA 4 cut(s) 219, 258, 314, 701
TscAI CASTG 2 cut(s) 103, 291
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 113, 470
TspRI CASTG 2 cut(s) 103, 291
XapI RAATTY 2 cut(s) 580, 697
XspI CTAG 2 cut(s) 5, 231
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.