Rh1BG043300

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003398
Physical Location & Seq
Forward (+)
5709816 .. 5711040
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG043300.1

Sequence Viewer

Length: 735 bp
ATGTTGGCTTTATCTCCTCCTCTGTTTTCAACAATTGCATGGCCCTTGGAGGATCATCCCATAAGTCATGACCACAACAACTATTTCTCAGCAGAATCATCGCCTCCTCATTTTCCTACAACTCTGCAGCCACAGTTTGATCAGCTTGATCACTCTACGCCATCCACCGCAATCAGCGGCGAGTCCAACATTTCTTCAGTGGATAAGAAGCTTAACCACAATGCTAGTGAGCGTGACCGCCGCAAGAAGATCAACAACTTGTACTCATCACTACGTTCACTGGTTCCCGCGGATCATGCGAAAAAATTAAGCATTCCAGCCACAGTTTCGCGGGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTAATTCAAAAAAGAGACGAGCTTTTATCGAAAATTTCTACGCAAGAAAATGTAATTTTACAAGAGGAAAAGAAAGTAAAAAGCACAGCTCGGAGGAGTCGGAGCTCATTATCAGCTGTTTCAACAACTCGTCTTAGTGATAGTGAAGTTGCAATTCAAATATCCACAATTAAGTCCTCCCACAATTTTTTATCTCGGATTTTGCAAAGTCTGGAGGAGGATGGGCTTGAAATACTAAATGCTTCTTCCTTTGAGTCCTCTGGAGGGAGGGTCTTCTATAATTTACATCTGCAGGTAGATATGTTCTATAGGTTGGAATGCGAGAATTTAAGCGAGAGGCTCATGTCCTTCTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

244

Amino Acids

27.54

Weight (kDa)

6.51

Isoelectric Point (pI)

71.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 69 - 120 3.8e-14 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 658
AccII CGCG 2 cut(s) 290, 331
AciI CCGC 7 cut(s) 168, 177, 238, 241, 288, 290, 331
AclWI GGATC 2 cut(s) 60, 300
AcsI RAATTY 2 cut(s) 408, 700
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 639
AgsI TTSAA 5 cut(s) 30, 383, 498, 533, 605
AluBI AGCT 7 cut(s) 145, 211, 355, 397, 464, 480, 491
AluI AGCT 7 cut(s) 145, 211, 355, 397, 464, 480, 491
Alw21I GWGCWC 2 cut(s) 357, 482
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 2 cut(s) 60, 300
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 127, 361
ApoI RAATTY 2 cut(s) 408, 700
AspS9I GGNCC 1 cut(s) 42
BanII GRGCYC 2 cut(s) 357, 482
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 2 cut(s) 357, 482
BbvI GCAGC 2 cut(s) 139, 373
BccI CCATC 2 cut(s) 169, 590
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BclI TGATCA 2 cut(s) 139, 148
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 3 cut(s) 125, 665, 682
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 4 cut(s) 128, 178, 241, 362
BlsI GCNGC 4 cut(s) 129, 179, 242, 363
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 640
BpmI CTGGAG 3 cut(s) 341, 608, 657
BsaJI CCNNGG 2 cut(s) 45, 288
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 45, 288
BseGI GGATG 3 cut(s) 55, 161, 601
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 5 cut(s) 6, 9, 96, 484, 605
BseXI GCAGC 2 cut(s) 139, 373
Bsh1236I CGCG 2 cut(s) 290, 331
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 357, 482
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 639
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 387
BsmI GAATGC 2 cut(s) 312, 698
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 357, 482
Bsp143I GATC 5 cut(s) 52, 139, 148, 249, 292
BspACI CCGC 7 cut(s) 168, 177, 238, 241, 288, 290, 331
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 2 cut(s) 290, 331
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 2 cut(s) 129, 669
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 2 cut(s) 60, 300
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 45, 288
BssMI GATC 5 cut(s) 52, 139, 148, 249, 292
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 135, 325
BstDEI CTNAG 2 cut(s) 88, 509
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 3 cut(s) 55, 161, 601
BstFNI CGCG 2 cut(s) 290, 331
BstKTI GATC 5 cut(s) 55, 142, 151, 252, 295
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 5 cut(s) 52, 139, 148, 249, 292
BstMWI GCNNNNNNNGC 2 cut(s) 296, 361
BstSFI CTRYAG 3 cut(s) 125, 665, 682
BstUI CGCG 2 cut(s) 290, 331
BstV1I GCAGC 2 cut(s) 139, 373
BstV2I GAAGAC 1 cut(s) 640
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 55, 161, 601
BtsIMutI CAGTG 2 cut(s) 204, 278
BveI ACCTGC 1 cut(s) 658
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 42
Cfr42I CCGCGG 1 cut(s) 291
Csp6I GTAC 1 cut(s) 262
CviAII CATG 5 cut(s) 39, 68, 296, 718, 732
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 88, 509
DpnI GATC 5 cut(s) 54, 141, 150, 251, 294
DpnII GATC 5 cut(s) 52, 139, 148, 249, 292
Ecl136II GAGCTC 2 cut(s) 355, 480
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 357, 482
Eco53kI GAGCTC 2 cut(s) 355, 480
Eco57I CTGAAG 1 cut(s) 180
EcoICRI GAGCTC 2 cut(s) 355, 480
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 2 cut(s) 357, 482
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 5 cut(s) 42, 71, 299, 721, 735
FaqI GGGAC 1 cut(s) 387
FatI CATG 5 cut(s) 38, 67, 295, 717, 731
FauI CCCGC 2 cut(s) 295, 324
FbaI TGATCA 2 cut(s) 139, 148
Fnu4HI GCNGC 4 cut(s) 128, 178, 241, 362
FokI GGATG 3 cut(s) 42, 148, 608
FriOI GRGCYC 2 cut(s) 357, 482
Fsp4HI GCNGC 4 cut(s) 128, 178, 241, 362
FspBI CTAG 1 cut(s) 225
GluI GCNGC 4 cut(s) 128, 178, 241, 362
GsuI CTGGAG 3 cut(s) 341, 608, 657
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 5 cut(s) 42, 71, 299, 721, 735
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 4 cut(s) 95, 182, 472, 629
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 3 cut(s) 468, 477, 573
Hpy188III TCNNGA 4 cut(s) 68, 350, 587, 636
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 733
HpyCH4III ACNGT 2 cut(s) 135, 325
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 6 cut(s) 38, 127, 527, 580, 667, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 361
HpyF3I CTNAG 2 cut(s) 88, 509
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 5 cut(s) 42, 71, 299, 721, 735
Ksp22I TGATCA 2 cut(s) 139, 148
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 5 cut(s) 52, 139, 148, 249, 292
LmnI GCTCC 2 cut(s) 360, 477
LpnPI CCDG 7 cut(s) 266, 330, 363, 371, 572, 621, 653
Lsp1109I GCAGC 2 cut(s) 139, 373
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 233
MalI GATC 5 cut(s) 54, 141, 150, 251, 294
MboI GATC 5 cut(s) 52, 139, 148, 249, 292
MboII GAAGA 4 cut(s) 186, 259, 612, 640
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 357, 482
MlyI GAGTC 3 cut(s) 191, 481, 638
MmeI TCCRAC 3 cut(s) 210, 455, 669
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 4 cut(s) 213, 308, 546, 704
MspA1I CMGCKG 3 cut(s) 177, 290, 491
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 2 cut(s) 312, 698
MvnI CGCG 2 cut(s) 290, 331
MwoI GCNNNNNNNGC 2 cut(s) 296, 361
NdeII GATC 5 cut(s) 52, 139, 148, 249, 292
NlaIII CATG 5 cut(s) 42, 71, 299, 721, 735
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 733
PagI TCATGA 1 cut(s) 67
PctI GAATGC 2 cut(s) 312, 698
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 4 cut(s) 129, 179, 242, 363
PleI GAGTC 3 cut(s) 190, 480, 637
PpsI GAGTC 3 cut(s) 190, 480, 637
Psp124BI GAGCTC 2 cut(s) 357, 482
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 2 cut(s) 129, 669
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 2 cut(s) 357, 482
SacII CCGCGG 1 cut(s) 291
SaqAI TTAA 4 cut(s) 213, 308, 546, 704
SatI GCNGC 4 cut(s) 128, 178, 241, 362
Sau3AI GATC 5 cut(s) 52, 139, 148, 249, 292
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 3 cut(s) 191, 481, 638
SduI GDGCHC 2 cut(s) 357, 482
SfcI CTRYAG 3 cut(s) 125, 665, 682
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SsiI CCGC 7 cut(s) 168, 177, 238, 241, 288, 290, 331
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 2 cut(s) 357, 482
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 135, 325
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 404
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 180, 243
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 4 cut(s) 213, 308, 546, 704
Tru9I TTAA 4 cut(s) 213, 308, 546, 704
TscAI CASTG 2 cut(s) 204, 285
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 127, 361
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 2 cut(s) 204, 285
XapI RAATTY 2 cut(s) 408, 700
XspI CTAG 1 cut(s) 225
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.