Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003398

Physical Location & Seq

Genomic Coordinates Reverse (-)

7381585 .. 7388451

Gene Structure 6867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G040100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTGGCTTTATCTCCTCCCTCGTTTTCAACCATTGGATGGCCTTTAGAGGATCCCAAAAGTCATGACCAGAACTACTTCTACAGGGATAGTTTTACAGATCAAATTGCAGAGTCATTTCTTCATACCCTTCCATCTCAGCTGCCACAAGTTGAGCCTACTCGTTCCACACCATCCACAACTGTAAGCGGAGGGTACGCCGGCGTTTCCACGATGGTGAAGAAGCTTAACCATAATGCTAGTGAGCGTGATCGTCGACAGAAGATCAACAGCTTGTATTCTTCATTGCGTTCACTGCTTCCTGCAGATCAAATGAAGAAATTAAGCATTCCAAACACAATTTCGCGTGTGGTGAAATACATACCAGAGCTCCAAAAGCAAGTGGAAGGACTAATTAGAAAGAGGGAGGAGCTTTTGGTAAGAATTTCTAAGCAAGAAGATCAGGAATTGCATGAAGAGAAGAAAATGAAAAGCACAGCTGGGACTGGGAGCTCATTATCTGCCGTTTCAACTTACCGTCTTAACGACAGAGAAGTTGCGATTCAAATATCCACCCTTAAGACCCACAACAATCTATTATCTGAGATCTTGTTAAACTTGGAGGAGGAAGGGCTTCAAATACTAAATGCTTCTTCCTTTGAGTCCTCTGGAGAGAGGGTCTTCTATAATTTACATCTTCAGGTAGAAAGAAGTTATAGATTAGAATGTGAGAATTTAAGCGAGAAGCTCATGTCCTTCTATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

249

Amino Acids

28.23

Weight (kDa)

6.62

Isoelectric Point (pI)

62.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41240 AT2G41240 AT3G56970 AT3G56980
fragaria_vesca	FvH4_2g11650 FvH4_7g03950 FvH4_7g03950
malus_domestica	MD14G1086500.v1.1 MD14G1086600.v1.1
prunus_persica	Prupe.1G213700_v2.0.a1 Prupe.3G165100_v2.0.a1 Prupe.7G039800_v2.0.a1 Prupe.7G039900_v2.0.a1 Prupe.7G040100_v2.0.a1 Prupe.7G040100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321521 RchiOBHm_Chr6g0270891
rosa_laevigata	RLG00000013761 RLG00000030419 RLG00000030421
rosa_multiflora	Rmu_ssc0000474.1_g000012
rosa_roxburghii	Rroxscaffold_4G00327570 Rroxscaffold_7G00197510
rosa_rugosa	Rorug01G0033000 Rorug01G0033100 Rorug01G0033200 Rorug06G0057100
rosa_samantha	Rh1BG043100 Rh1BG043300 Rh1CG047600 Rh1DG052100 Rh6AG176600 Rh6BG180000 Rh6CG176100 Rh6DG168300
rosa_wichuraiana	Rw6G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	256
AccII	CGCG	1 cut(s)	346
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	2 cut(s)	47, 60
AcsI	RAATTY	2 cut(s)	423, 712
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	30, 510, 545, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	8 cut(s)	142, 226, 273, 370, 412, 479, 492, 727
AluI	AGCT	8 cut(s)	142, 226, 273, 370, 412, 479, 492, 727
Alw21I	GWGCWC	2 cut(s)	372, 494
AlwI	GGATC	2 cut(s)	47, 60
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	2 cut(s)	423, 712
Asp700I	GAANNNNTTC	2 cut(s)	77, 612
AsuHPI	GGTGA	2 cut(s)	229, 364
BamHI	GGATCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	372, 494
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	2 cut(s)	372, 494
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	4 cut(s)	33, 142, 181, 208
BceAI	ACGGC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	82, 303
BfrI	CTTAAG	1 cut(s)	557
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	669
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	44, 173
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	152, 573
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	3 cut(s)	6, 422, 617
BseXI	GCAGC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	372, 494
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	372, 494
Bsp143I	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	151, 574
BspFNI	CGCG	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	2 cut(s)	47, 60
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	200
BssMI	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
Bst4CI	ACNGT	2 cut(s)	184, 518
Bst6I	CTCTTC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	138, 429, 582
BstF5I	GGATG	2 cut(s)	44, 173
BstFNI	CGCG	1 cut(s)	346
BstKTI	GATC	7 cut(s)	55, 103, 253, 267, 310, 442, 588
BstMBI	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 376
BstSFI	CTRYAG	2 cut(s)	82, 303
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	652
BstX2I	RGATCY	2 cut(s)	52, 585
BstYI	RGATCY	2 cut(s)	52, 585
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	44, 173
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	65, 452, 730
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	138, 429, 582
DpnI	GATC	7 cut(s)	54, 102, 252, 266, 309, 441, 587
DpnII	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	2 cut(s)	370, 492
Eco24I	GRGCYC	2 cut(s)	372, 494
Eco53kI	GAGCTC	2 cut(s)	370, 492
Eco57I	CTGAAG	1 cut(s)	662
EcoICRI	GAGCTC	2 cut(s)	370, 492
EcoT38I	GRGCYC	2 cut(s)	372, 494
FaeI	CATG	3 cut(s)	68, 455, 733
FaiI	YATR	9 cut(s)	66, 126, 234, 362, 453, 666, 696, 731, 741
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	3 cut(s)	64, 451, 729
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	51, 160
FriOI	GRGCYC	2 cut(s)	372, 494
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	3 cut(s)	68, 455, 733
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	3 cut(s)	113, 541, 641
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	229, 364
Hpy166II	GTNNAC	2 cut(s)	257, 293
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	3 cut(s)	65, 443, 648
Hpy8I	GTNNAC	2 cut(s)	257, 293
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	4 cut(s)	140, 380, 602, 745
HpyCH4III	ACNGT	2 cut(s)	184, 518
HpyCH4V	TGCA	3 cut(s)	110, 305, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 376
HpyF3I	CTNAG	3 cut(s)	138, 429, 582
Hsp92II	CATG	3 cut(s)	68, 455, 733
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
LmnI	GCTCC	3 cut(s)	375, 409, 489
Lsp1109I	GCAGC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	240
MalI	GATC	7 cut(s)	54, 102, 252, 266, 309, 441, 587
MboI	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
MflI	RGATCY	2 cut(s)	52, 585
MhlI	GDGCHC	2 cut(s)	372, 494
MluCI	AATT	8 cut(s)	105, 320, 339, 393, 423, 446, 667, 712
MlyI	GAGTC	2 cut(s)	122, 650
MreI	CGCCGGCG	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	2 cut(s)	77, 612
MseI	TTAA	6 cut(s)	228, 323, 522, 558, 593, 716
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	2 cut(s)	142, 479
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	327
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	295, 376
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	68, 455, 733
NlaIV	GGNNCC	1 cut(s)	54
OliI	CACNNNNGTG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	64
PctI	GAATGC	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	77, 612
PfeI	GAWTC	1 cut(s)	541
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	2 cut(s)	121, 649
PpsI	GAGTC	2 cut(s)	121, 649
Psp124BI	GAGCTC	2 cut(s)	372, 494
PspFI	CCCAGC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	54
PsrI	GAACNNNNNNTAC	2 cut(s)	65, 97
PstI	CTGCAG	1 cut(s)	307
PsuI	RGATCY	2 cut(s)	52, 585
PvuII	CAGCTG	2 cut(s)	142, 479
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	2 cut(s)	372, 494
SalI	GTCGAC	1 cut(s)	255
SaqAI	TTAA	6 cut(s)	228, 323, 522, 558, 593, 716
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	7 cut(s)	52, 100, 250, 264, 307, 439, 585
SchI	GAGTC	2 cut(s)	122, 650
SduI	GDGCHC	2 cut(s)	372, 494
SetI	ASST	9 cut(s)	144, 228, 275, 372, 414, 481, 494, 684, 729
SfcI	CTRYAG	2 cut(s)	82, 303
SgrAI	CRCCGGYG	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	8 cut(s)	105, 320, 339, 393, 423, 446, 667, 712
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	2 cut(s)	372, 494
TaaI	ACNGT	2 cut(s)	184, 518
TaqI	TCGA	1 cut(s)	256
TasI	AATT	8 cut(s)	105, 320, 339, 393, 423, 446, 667, 712
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	6 cut(s)	228, 323, 522, 558, 593, 716
Tru9I	TTAA	6 cut(s)	228, 323, 522, 558, 593, 716
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	5 cut(s)	113, 273, 329, 468, 482
TspRI	CASTG	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	423, 712
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	2 cut(s)	77, 612
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.