Rh1BG043100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003398
Physical Location & Seq
Forward (+)
5697620 .. 5698154
535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG043100.1

Sequence Viewer

Length: 306 bp
ATGTTGGCTTTATCTCCTCCTCTATTTTCAACAATTGGATGGCCCTTGGAGGATTATCCCATAAGTCATGACCACAACAACTATTTCTCAGCAGAATCATCGCTTCTTCATTTTCCTACAACTCTGCAGCCACAGTTTGATCAGCTTGATCACTCTATGCCATCCACCGCAATCAGCGGCGAGTCCAACATTTCTTCAATGGCTAAGAAGCTTAACTACAATGCTAGTGAGCGTGACCGCCGCAAGAAGATCAACAATTTGTACTCATCACTACGTTCACTCGTTCCTGCCGATCATGCGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

101

Amino Acids

11.36

Weight (kDa)

6.16

Isoelectric Point (pI)

66.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 70 - 96 2.8e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 168, 177, 238, 241, 299
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 2 cut(s) 30, 198
AluBI AGCT 2 cut(s) 145, 211
AluI AGCT 2 cut(s) 145, 211
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 42
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 33, 169
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BclI TGATCA 2 cut(s) 139, 148
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 125
BisI GCNGC 3 cut(s) 128, 178, 241
BlsI GCNGC 3 cut(s) 129, 179, 242
BmgT120I GGNCC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 44, 161
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 6, 9
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 43
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 4 cut(s) 139, 148, 249, 292
BspACI CCGC 5 cut(s) 168, 177, 238, 241, 299
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 101
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 139, 148, 249, 292
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 88, 204
BstF5I GGATG 2 cut(s) 44, 161
BstKTI GATC 4 cut(s) 142, 151, 252, 295
BstMBI GATC 4 cut(s) 139, 148, 249, 292
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 44, 161
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 68, 296
CviJI RGCY 6 cut(s) 8, 43, 130, 145, 203, 211
CviKI_1 RGCY 6 cut(s) 8, 43, 130, 145, 203, 211
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 88, 204
DpnI GATC 4 cut(s) 141, 150, 251, 294
DpnII GATC 4 cut(s) 139, 148, 249, 292
Eco130I CCWWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 71, 299
FaiI YATR 5 cut(s) 62, 69, 158, 297, 304
FatI CATG 2 cut(s) 67, 295
FbaI TGATCA 2 cut(s) 139, 148
Fnu4HI GCNGC 3 cut(s) 128, 178, 241
FokI GGATG 2 cut(s) 51, 148
Fsp4HI GCNGC 3 cut(s) 128, 178, 241
FspBI CTAG 1 cut(s) 225
GluI GCNGC 3 cut(s) 128, 178, 241
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 2 cut(s) 71, 299
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 95, 182
Hpy166II GTNNAC 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 88, 204
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 71, 299
Ksp22I TGATCA 2 cut(s) 139, 148
Kzo9I GATC 4 cut(s) 139, 148, 249, 292
LpnPI CCDG 1 cut(s) 300
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 233
MalI GATC 4 cut(s) 141, 150, 251, 294
MboI GATC 4 cut(s) 139, 148, 249, 292
MboII GAAGA 3 cut(s) 98, 186, 259
MfeI CAATTG 1 cut(s) 33
MluCI AATT 2 cut(s) 33, 256
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 3 cut(s) 27, 30, 43
MseI TTAA 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 177
MunI CAATTG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 4 cut(s) 139, 148, 249, 292
NlaIII CATG 2 cut(s) 71, 299
NmuCI GTSAC 1 cut(s) 233
PagI TCATGA 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 129, 179, 242
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 129
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 3 cut(s) 128, 178, 241
Sau3AI GATC 4 cut(s) 139, 148, 249, 292
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 191
SetI ASST 3 cut(s) 147, 213, 277
SfcI CTRYAG 1 cut(s) 125
SgeI CNNG 9 cut(s) 58, 80, 158, 193, 237, 245, 256, 293, 299
Sse9I AATT 2 cut(s) 33, 256
SsiI CCGC 5 cut(s) 168, 177, 238, 241, 299
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 277
TasI AATT 2 cut(s) 33, 256
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 180, 243
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 98
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.