FvH4_7g03950

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003398
Physical Location & Seq
Forward (+)
4545805 .. 4547275
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03950.t2

Sequence Viewer

Length: 732 bp
ATGTTGGGTTTATCTCCTCCTCTCTTTTCAACAATTGCATGGCCCTTGGAGGATCATCCTACAAGTTATGACCACAACAACTATTTCTCAGCAGAATCATCGCTTCTTCATTTCCCTACAACTCTGCAGCCACAGTTTGATCAGCTTGATGATCACTCCACGCCATCCACCGCAGTCAGCGGCGAGTCCAACATTTCTTCGATGGCTAAGAAGCTCAACCACAATGCTAGTGAGCGTGAACGCCGCAAGAATATCAATAACTTGTACTCCTCACTGCGTTCTCTAGTTCCCGCTGATCATGCGAAAAGATTGAGCATTCCAGCCACAGTTTCACGGGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTAATTCAAAAACGAGACGAGCTACTGTCAAAAAATTTTAAGCAAGAAAATGTAACCTTACAGGAGGAAGAACAAGCAAAAGGCACAGCAGCTAGAAGGAGTCGGAGCTCAGTATCTGCTGTTATAACAACTCGTCTTAGTGATACTGAAGTTTCCATTCAAATATCCACAATTACGTCATCCCACAATTTCATATCTCGGATTTTGCAAACTCTCGAGGAGGATGGGCTAGAATTACTGAATGCTTCTTCCTTTGAGTCCTCTGGAGGGAGGGTCTTCTATAATTTACATCTCCAGGTAGATATGTTCTACAGATTGGAATGCGAGAAGATAAGCGAGAAGCTCATGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

244

Amino Acids

27.41

Weight (kDa)

5.92

Isoelectric Point (pI)

69.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 70 - 121 1.3e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
AciI CCGC 4 cut(s) 171, 180, 244, 291
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 645
AgsI TTSAA 3 cut(s) 30, 386, 539
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 7 cut(s) 145, 214, 358, 400, 470, 486, 721
AluI AGCT 7 cut(s) 145, 214, 358, 400, 470, 486, 721
Alw21I GWGCWC 2 cut(s) 360, 488
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 127, 364, 467
ApoI RAATTY 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 593
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BanII GRGCYC 2 cut(s) 360, 488
BbsI GAAGAC 1 cut(s) 646
Bbv12I GWGCWC 2 cut(s) 360, 488
BbvI GCAGC 3 cut(s) 139, 376, 479
BccI CCATC 3 cut(s) 172, 196, 596
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 674
BclI TGATCA 3 cut(s) 139, 151, 295
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 4 cut(s) 228, 284, 471, 608
BfmI CTRYAG 2 cut(s) 125, 688
BisI GCNGC 5 cut(s) 128, 181, 244, 365, 468
BlsI GCNGC 5 cut(s) 129, 182, 245, 366, 469
Bme1390I CCNGG 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 674
BpiI GAAGAC 1 cut(s) 646
BpmI CTGGAG 3 cut(s) 344, 656, 663
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 636, 666
Bsc4I CCNNNNNNNGG 1 cut(s) 645
BseBI CCWGG 1 cut(s) 674
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 4 cut(s) 55, 164, 557, 607
BseLI CCNNNNNNNGG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 102, 501
BseRI GAGGAG 4 cut(s) 6, 9, 259, 611
BseXI GCAGC 3 cut(s) 139, 376, 479
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 360, 488
BsiHKCI CYCGRG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 645
BsmAI GTCTC 1 cut(s) 387
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 390
BsmI GAATGC 3 cut(s) 315, 625, 704
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 360, 488
Bsp143I GATC 4 cut(s) 52, 139, 151, 295
BspACI CCGC 4 cut(s) 171, 180, 244, 291
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 101, 500
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 52, 139, 151, 295
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 3 cut(s) 135, 328, 405
BstDEI CTNAG 4 cut(s) 88, 207, 487, 515
BstF5I GGATG 4 cut(s) 55, 164, 557, 607
BstKTI GATC 4 cut(s) 55, 142, 154, 298
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 4 cut(s) 52, 139, 151, 295
BstMWI GCNNNNNNNGC 2 cut(s) 299, 364
BstNI CCWGG 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 672
BstSFI CTRYAG 2 cut(s) 125, 688
BstV1I GCAGC 3 cut(s) 139, 376, 479
BstV2I GAAGAC 1 cut(s) 646
BsuRI GGCC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 4 cut(s) 55, 164, 557, 607
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 272
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 39, 299, 724
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 4 cut(s) 88, 207, 487, 515
DpnI GATC 4 cut(s) 54, 141, 153, 297
DpnII GATC 4 cut(s) 52, 139, 151, 295
Ecl136II GAGCTC 2 cut(s) 358, 486
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 360, 488
Eco53kI GAGCTC 2 cut(s) 358, 486
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 593
EcoICRI GAGCTC 2 cut(s) 358, 486
EcoRII CCWGG 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 360, 488
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 3 cut(s) 42, 302, 727
FaiI YATR 8 cut(s) 40, 69, 300, 503, 572, 660, 683, 725
FaqI GGGAC 1 cut(s) 390
FatI CATG 3 cut(s) 38, 298, 723
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 3 cut(s) 139, 151, 295
Fnu4HI GCNGC 5 cut(s) 128, 181, 244, 365, 468
FokI GGATG 4 cut(s) 42, 151, 544, 614
FriOI GRGCYC 2 cut(s) 360, 488
Fsp4HI GCNGC 5 cut(s) 128, 181, 244, 365, 468
FspBI CTAG 4 cut(s) 228, 284, 471, 608
GluI GCNGC 5 cut(s) 128, 181, 244, 365, 468
GsuI CTGGAG 3 cut(s) 344, 656, 663
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 3 cut(s) 42, 302, 727
HinfI GANTC 4 cut(s) 95, 185, 478, 635
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 483, 579
Hpy188III TCNNGA 3 cut(s) 353, 593, 642
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 3 cut(s) 135, 328, 405
HpyCH4IV ACGT 1 cut(s) 554
HpyCH4V TGCA 3 cut(s) 38, 127, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 364
HpyF3I CTNAG 4 cut(s) 88, 207, 487, 515
HpySE526I ACGT 1 cut(s) 554
Hsp92II CATG 3 cut(s) 42, 302, 727
Ksp22I TGATCA 3 cut(s) 139, 151, 295
Kzo9I GATC 4 cut(s) 52, 139, 151, 295
LmnI GCTCC 2 cut(s) 363, 483
LpnPI CCDG 7 cut(s) 333, 366, 374, 425, 627, 659, 686
Lsp1109I GCAGC 3 cut(s) 139, 376, 479
MaeI CTAG 4 cut(s) 228, 284, 471, 608
MaeII ACGT 1 cut(s) 554
MaeIII GTNAC 1 cut(s) 430
MalI GATC 4 cut(s) 54, 141, 153, 297
MboI GATC 4 cut(s) 52, 139, 151, 295
MboII GAAGA 6 cut(s) 98, 189, 458, 618, 646, 718
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 360, 488
MluCI AATT 7 cut(s) 33, 381, 412, 549, 565, 611, 661
MlyI GAGTC 3 cut(s) 194, 487, 644
MmeI TCCRAC 2 cut(s) 213, 461
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 180, 293
MspR9I CCNGG 1 cut(s) 674
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 3 cut(s) 315, 625, 704
MvaI CCWGG 1 cut(s) 674
MwoI GCNNNNNNNGC 2 cut(s) 299, 364
NdeII GATC 4 cut(s) 52, 139, 151, 295
NlaIII CATG 3 cut(s) 42, 302, 727
PaeR7I CTCGAG 1 cut(s) 593
PctI GAATGC 3 cut(s) 315, 625, 704
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 5 cut(s) 129, 182, 245, 366, 469
PleI GAGTC 3 cut(s) 193, 486, 643
PpsI GAGTC 3 cut(s) 193, 486, 643
PsiI TTATAA 1 cut(s) 503
Psp124BI GAGCTC 2 cut(s) 360, 488
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SacI GAGCTC 2 cut(s) 360, 488
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 5 cut(s) 128, 181, 244, 365, 468
Sau3AI GATC 4 cut(s) 52, 139, 151, 295
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 3 cut(s) 194, 487, 644
ScrFI CCNGG 1 cut(s) 674
SduI GDGCHC 2 cut(s) 360, 488
SfcI CTRYAG 2 cut(s) 125, 688
Sfr274I CTCGAG 1 cut(s) 593
SlaI CTCGAG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 7 cut(s) 33, 381, 412, 549, 565, 611, 661
SsiI CCGC 4 cut(s) 171, 180, 244, 291
SspMI CTAG 4 cut(s) 228, 284, 471, 608
SstI GAGCTC 2 cut(s) 360, 488
StyD4I CCNGG 1 cut(s) 672
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 135, 328, 405
TaiI ACGT 1 cut(s) 557
TaqI TCGA 2 cut(s) 200, 594
TasI AATT 7 cut(s) 33, 381, 412, 549, 565, 611, 661
TatI WGTACW 1 cut(s) 264
TauI GCSGC 2 cut(s) 183, 246
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 279
TseI GCWGC 3 cut(s) 127, 364, 467
TspDTI ATGAA 2 cut(s) 98, 559
TspRI CASTG 1 cut(s) 279
XapI RAATTY 1 cut(s) 412
XhoI CTCGAG 1 cut(s) 593
XspI CTAG 4 cut(s) 228, 284, 471, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.