RLG00000030419

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003398
Physical Location & Seq
Reverse (-)
61209658 .. 61210966
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030419

Sequence Viewer

Length: 600 bp
ATGCATGACAAGTACTTAATCAATTTCGGTCTTGCGGACTATGGTTTAAATGGAGAGCCACAGTTTGATCAGCTTGATCACTTTACGCCATCCAGTGCAATCAGCGGCGAGTCCAACATTTCTTCAGTGGATAAGAAGCTTAACCACAATGCTAGTGAGCGTGACCGCCGCAAGGAGATCAACAACTTGTACTCATCACTACGTTCACTCGTTGCCGCAGATCATGCCAAAAGATTAAGCATTCCAGCCACAGTTTCGCGGGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTGATTCATAAAAGAGACGAGCTTTTATCGAAAATTTCTACGCAAGAAAATGTAATATTACAAGAGGAAAAGAAAGTAAAAAGCACAGCTCGGAGGAGTCGGAGCTCATTATCCGCTGTTTCAACAACTCGTCTTAGTGATAGTGAAGTTGCAATTCAAATATCAACAATTAAGTCCTCCCACAATTTCGTATCTCGGATTTTGGAAAGTCTGGAGGAGGAGGGGCTTGAAATACTAAATGCTTCTTCCTTTGAATCCTCTGGAGGGAGGGTCTTCTATAATTTACATCTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

200

Amino Acids

22.33

Weight (kDa)

6.66

Isoelectric Point (pI)

66.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 45 - 96 3.4e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 259
AciI CCGC 7 cut(s) 35, 105, 166, 169, 216, 259, 417
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 2 cut(s) 14, 191
AfiI CCNNNNNNNGG 2 cut(s) 172, 567
AgsI TTSAA 4 cut(s) 426, 461, 533, 557
AluBI AGCT 6 cut(s) 73, 139, 283, 325, 392, 408
AluI AGCT 6 cut(s) 73, 139, 283, 325, 392, 408
Alw21I GWGCWC 2 cut(s) 285, 410
Alw26I GTCTC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 336
BanII GRGCYC 2 cut(s) 285, 410
BbsI GAAGAC 1 cut(s) 568
Bbv12I GWGCWC 2 cut(s) 285, 410
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 97
BclI TGATCA 2 cut(s) 67, 76
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 153
BisI GCNGC 4 cut(s) 106, 169, 216, 290
BlsI GCNGC 4 cut(s) 107, 170, 217, 291
BmcAI AGTACT 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 568
BpmI CTGGAG 4 cut(s) 269, 536, 578, 585
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 567
Bse1I ACTGG 2 cut(s) 93, 595
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 172, 567
BseNI ACTGG 2 cut(s) 93, 595
BseRI GAGGAG 3 cut(s) 412, 533, 536
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 285, 410
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 172, 567
BsmAI GTCTC 1 cut(s) 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 285, 410
Bsp143I GATC 4 cut(s) 67, 76, 177, 220
BspACI CCGC 7 cut(s) 35, 105, 166, 169, 216, 259, 417
BspFNI CGCG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 93, 595
BssMI GATC 4 cut(s) 67, 76, 177, 220
Bst4CI ACNGT 2 cut(s) 63, 253
BstAPI GCANNNNNTGC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 259
BstKTI GATC 4 cut(s) 70, 79, 180, 223
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 4 cut(s) 67, 76, 177, 220
BstMWI GCNNNNNNNGC 2 cut(s) 224, 289
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 568
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 100, 132
Csp6I GTAC 2 cut(s) 13, 190
CviAII CATG 2 cut(s) 5, 224
CviJI RGCY 9 cut(s) 58, 73, 139, 248, 283, 325, 392, 408, 529
CviKI_1 RGCY 9 cut(s) 58, 73, 139, 248, 283, 325, 392, 408, 529
CviQI GTAC 2 cut(s) 13, 190
DdeI CTNAG 1 cut(s) 437
DpnI GATC 4 cut(s) 69, 78, 179, 222
DpnII GATC 4 cut(s) 67, 76, 177, 220
DraI TTTAAA 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 283, 408
Eco24I GRGCYC 2 cut(s) 285, 410
Eco53kI GAGCTC 2 cut(s) 283, 408
Eco57I CTGAAG 1 cut(s) 108
EcoICRI GAGCTC 2 cut(s) 283, 408
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 285, 410
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 2 cut(s) 8, 227
FaiI YATR 5 cut(s) 6, 42, 225, 312, 582
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 4, 223
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 2 cut(s) 67, 76
Fnu4HI GCNGC 4 cut(s) 106, 169, 216, 290
FokI GGATG 1 cut(s) 76
FriOI GRGCYC 2 cut(s) 285, 410
Fsp4HI GCNGC 4 cut(s) 106, 169, 216, 290
FspBI CTAG 1 cut(s) 153
GluI GCNGC 4 cut(s) 106, 169, 216, 290
GsuI CTGGAG 4 cut(s) 269, 536, 578, 585
Hin1II CATG 2 cut(s) 8, 227
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 110, 307, 400, 557
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 396, 405, 501
Hpy188III TCNNGA 3 cut(s) 278, 515, 564
Hpy8I GTNNAC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 63, 253
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 4, 98, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 289
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 2 cut(s) 8, 227
Ksp22I TGATCA 2 cut(s) 67, 76
Kzo9I GATC 4 cut(s) 67, 76, 177, 220
LmnI GCTCC 2 cut(s) 288, 405
LpnPI CCDG 6 cut(s) 106, 258, 291, 299, 500, 549
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 69, 78, 179, 222
MboI GATC 4 cut(s) 67, 76, 177, 220
MboII GAAGA 3 cut(s) 114, 540, 568
MhlI GDGCHC 2 cut(s) 285, 410
MluCI AATT 6 cut(s) 22, 336, 456, 471, 487, 583
MlyI GAGTC 2 cut(s) 119, 409
MmeI TCCRAC 2 cut(s) 138, 383
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 17, 47, 141, 236, 474
MspA1I CMGCKG 2 cut(s) 105, 419
Mva1269I GAATGC 1 cut(s) 240
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 224, 289
NdeII GATC 4 cut(s) 67, 76, 177, 220
NlaIII CATG 2 cut(s) 8, 227
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 307, 557
PkrI GCNGC 4 cut(s) 107, 170, 217, 291
PleI GAGTC 2 cut(s) 118, 408
PpsI GAGTC 2 cut(s) 118, 408
Psp124BI GAGCTC 2 cut(s) 285, 410
RsaI GTAC 2 cut(s) 14, 191
RsaNI GTAC 2 cut(s) 13, 190
SacI GAGCTC 2 cut(s) 285, 410
SaqAI TTAA 5 cut(s) 17, 47, 141, 236, 474
SatI GCNGC 4 cut(s) 106, 169, 216, 290
Sau3AI GATC 4 cut(s) 67, 76, 177, 220
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 2 cut(s) 119, 409
SduI GDGCHC 2 cut(s) 285, 410
SetI ASST 7 cut(s) 75, 141, 205, 285, 327, 394, 410
Sse9I AATT 6 cut(s) 22, 336, 456, 471, 487, 583
SsiI CCGC 7 cut(s) 35, 105, 166, 169, 216, 259, 417
SspI AATATT 1 cut(s) 360
SspMI CTAG 1 cut(s) 153
SstI GAGCTC 2 cut(s) 285, 410
TaaI ACNGT 2 cut(s) 63, 253
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 332
TaqII GACCGA 1 cut(s) 17
TasI AATT 6 cut(s) 22, 336, 456, 471, 487, 583
TatI WGTACW 2 cut(s) 12, 189
TauI GCSGC 3 cut(s) 108, 171, 218
TfiI GAWTC 2 cut(s) 307, 557
Tru1I TTAA 5 cut(s) 17, 47, 141, 236, 474
Tru9I TTAA 5 cut(s) 17, 47, 141, 236, 474
TscAI CASTG 2 cut(s) 100, 132
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 2 cut(s) 100, 132
XapI RAATTY 1 cut(s) 336
XspI CTAG 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.