AT3G57190

Peptide chain release factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
21166107 .. 21168376
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57190.1

Sequence Viewer

Length: 1221 bp
ATGGCGGCAAAGATTATTGGTGGATGCTGCTCATGGCGACGCTTTTACAGGAAGAGAACATCATCTCGATTTCTGATTTTCTCTGTTCGAGCCTCTAGTTCCATGGATGACATGGACACCGTCTACAAGCAATTGGGATTGTTTTCACTAAAGAAGAAGATTAAAGATGTTGTTCTTAAGGCTGAGATGTTTGCACCGGATGCTCTTGAGCTTGAAGAAGAGCAGTGGATAAAGCAAGAAGAAACAATGCGTTACTTTGATTTATGGGATGATCCCGCTAAATCTGATGAGATTCTTCTCAAATTAGCTGATCGAGCTAAAGCAGTCGATTCCCTCAAAGACCTCAAATACAAGGCTGAAGAAGCTAAGCTGATCATACAATTGGGTGAGATGGATGCTATAGATTACAGTCTCTTTGAGCAAGCCTATGATTCATCACTCGATGTAAGTAGATCGTTGCATCACTATGAGATGTCTAAGCTTCTTAGGGATCAATATGACGCTGAAGGCGCTTGTATGATTATCAAATCTGGATCTCCAGGCGCAAAATCTCAGATATGGACAGAGCAAGTTGTAAGTATGTATATCAAATGGGCAGAAAGGCTAGGCCAAAACGCGCGGGTGGCTGAGAAATGTAGTTTATTGAGTAATAAAAGTGGCGTAAGTTCAGCCACGATAGAGTTTGAATTCGAGTTTGCTTATGGTTATCTCTTAGGTGAGCGAGGTGTGCACCGCCTTATCATAAGTTCCACTTCTAATGAGGAATGTTCAGCGACTGTTGATATCATACCACTATTCTTGAGAGCATCTCCTGATTTTGAAGTAAAGGAAGGTGATTTGATTGTATCGTATCCTGCAAAAGAGGATCACAAAATAGCTGAGAATATGGTTTGTATCCACCATATTCCGAGTGGAGTAACACTACAATCTTCAGGAGAAAGAAACCGGTTTGCAAACAGGATCAAAGCTCTAAACCGGTTGAAGGCGAAGCTACTTGTGATAGCAAAAGAGCAAAAGGTTTCGGATGTAAATAAAATCGACAGCAAGAACATTTTGGAACCGCGGGAAGAAACCAGGAGTTATGTCTCTAAGGGTCACAAGATGGTGGTTGATAGAAAAACCGGTTTAGAGATTCTGGACCTGAAATCGGTCTTGGATGGAAACATTGGACCACTCCTTGGAGCTCATATTAGCATGAGAAGATCAATTGATGCGATTTAG

Protein Analysis

406

Amino Acids

45.97

Weight (kDa)

6.74

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCRF PF03462 77 - 247 5.2e-21 PCRF domain
RF-1 PF00472 294 - 371 5.6e-09 RF-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1178
AccI GTMKAC 1 cut(s) 123
AccII CGCG 3 cut(s) 617, 619, 1063
AciI CCGC 6 cut(s) 5, 276, 619, 733, 1061, 1063
AclWI GGATC 5 cut(s) 266, 498, 541, 873, 968
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 3 cut(s) 378, 525, 915
AfiI CCNNNNNNNGG 3 cut(s) 982, 1147, 1178
AflII CTTAAG 1 cut(s) 176
AgeI ACCGGT 3 cut(s) 945, 975, 1121
AgsI TTSAA 4 cut(s) 215, 686, 821, 982
AjnI CCWGG 2 cut(s) 538, 1073
AjuI GAANNNNNNNTTGG 2 cut(s) 1136, 1168
Alw21I GWGCWC 2 cut(s) 732, 1186
Alw26I GTCTC 2 cut(s) 416, 1090
Alw44I GTGCAC 1 cut(s) 728
AlwI GGATC 5 cut(s) 266, 498, 541, 873, 968
AlwNI CAGNNNCTG 1 cut(s) 776
AoxI GGCC 1 cut(s) 607
ApaLI GTGCAC 1 cut(s) 728
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 686
AsiGI ACCGGT 3 cut(s) 945, 975, 1121
AspLEI GCGC 3 cut(s) 512, 545, 619
AspS9I GGNCC 2 cut(s) 1138, 1169
AsuHPI GGTGA 3 cut(s) 398, 728, 845
AvaII GGWCC 2 cut(s) 1138, 1169
BaeGI GKGCMC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 1186
Bbv12I GWGCWC 2 cut(s) 732, 1186
BbvI GCAGC 1 cut(s) 14
BccI CCATC 3 cut(s) 385, 1096, 1151
BciT130I CCWGG 2 cut(s) 540, 1075
BciVI GTATCC 2 cut(s) 861, 905
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 416, 1090
BfaI CTAG 2 cut(s) 96, 605
BfmI CTRYAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 513
BfrI CTTAAG 1 cut(s) 176
BfuI GTATCC 2 cut(s) 861, 905
BisI GCNGC 2 cut(s) 6, 28
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 2 cut(s) 7, 29
Bme1390I CCNGG 2 cut(s) 540, 1075
Bme18I GGWCC 2 cut(s) 1138, 1169
BmgT120I GGNCC 2 cut(s) 1138, 1169
BmiI GGNNCC 1 cut(s) 1059
BmrFI CCNGG 2 cut(s) 540, 1075
BmsI GCATC 6 cut(s) 14, 190, 385, 469, 815, 1201
BplI GAGNNNNNCTC 2 cut(s) 793, 825
BpmI CTGGAG 1 cut(s) 522
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 227, 820
BsaJI CCNNGG 3 cut(s) 102, 1061, 1177
BsaWI WCCGGW 4 cut(s) 196, 945, 975, 1121
Bsc4I CCNNNNNNNGG 3 cut(s) 982, 1147, 1178
Bse118I RCCGGY 3 cut(s) 945, 975, 1121
BseBI CCWGG 2 cut(s) 540, 1075
BseDI CCNNGG 3 cut(s) 102, 1061, 1177
BseGI GGATG 7 cut(s) 29, 112, 205, 274, 400, 1030, 1162
BseLI CCNNNNNNNGG 3 cut(s) 982, 1147, 1178
BseMII CTCAG 4 cut(s) 174, 566, 618, 870
BseSI GKGCMC 1 cut(s) 732
BseXI GCAGC 1 cut(s) 14
Bsh1236I CGCG 3 cut(s) 617, 619, 1063
BshFI GGCC 1 cut(s) 609
BshTI ACCGGT 3 cut(s) 945, 975, 1121
BsiHKAI GWGCWC 2 cut(s) 732, 1186
BsiSI CCGG 4 cut(s) 197, 946, 976, 1122
BslI CCNNNNNNNGG 3 cut(s) 982, 1147, 1178
BsmAI GTCTC 2 cut(s) 416, 1090
BsnI GGCC 1 cut(s) 609
Bsp1286I GDGCHC 2 cut(s) 732, 1186
Bsp143I GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 6 cut(s) 5, 276, 619, 733, 1061, 1063
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 4 cut(s) 175, 565, 619, 871
BspFNI CGCG 3 cut(s) 617, 619, 1063
BspLI GGNNCC 1 cut(s) 1059
BspPI GGATC 5 cut(s) 266, 498, 541, 873, 968
BspQI GCTCTTC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 176
BsrFI RCCGGY 3 cut(s) 945, 975, 1121
BssAI RCCGGY 3 cut(s) 945, 975, 1121
BssECI CCNNGG 3 cut(s) 102, 1061, 1177
BssMI GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
BssT1I CCWWGG 2 cut(s) 102, 1177
Bst2UI CCWGG 2 cut(s) 540, 1075
Bst4CI ACNGT 3 cut(s) 121, 410, 778
Bst6I CTCTTC 2 cut(s) 47, 213
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 9 cut(s) 183, 366, 477, 485, 552, 627, 712, 879, 1089
BstDSI CCRYGG 2 cut(s) 102, 1061
BstF5I GGATG 7 cut(s) 29, 112, 205, 274, 400, 1030, 1162
BstFNI CGCG 3 cut(s) 617, 619, 1063
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 3 cut(s) 512, 545, 619
BstKTI GATC 9 cut(s) 274, 313, 375, 455, 493, 536, 868, 963, 1205
BstMAI GTCTC 2 cut(s) 416, 1090
BstMBI GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
BstMWI GCNNNNNNNGC 6 cut(s) 200, 314, 362, 509, 623, 727
BstNI CCWGG 2 cut(s) 540, 1075
BstSCI CCNGG 2 cut(s) 538, 1073
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 732
BstUI CGCG 3 cut(s) 617, 619, 1063
BstV1I GCAGC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BsuI GTATCC 2 cut(s) 861, 905
BsuRI GGCC 1 cut(s) 609
BtgI CCRYGG 2 cut(s) 102, 1061
BtsCI GGATG 7 cut(s) 29, 112, 205, 274, 400, 1030, 1162
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 3 cut(s) 512, 545, 619
Cfr10I RCCGGY 3 cut(s) 945, 975, 1121
Cfr13I GGNCC 2 cut(s) 1138, 1169
Cfr42I CCGCGG 1 cut(s) 1064
CseI GACGC 2 cut(s) 48, 509
CspAI ACCGGT 3 cut(s) 945, 975, 1121
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 4 cut(s) 33, 103, 112, 1195
DdeI CTNAG 9 cut(s) 183, 366, 477, 485, 552, 627, 712, 879, 1089
DpnI GATC 9 cut(s) 273, 312, 374, 454, 492, 535, 867, 962, 1204
DpnII GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
Eam1104I CTCTTC 2 cut(s) 47, 213
EarI CTCTTC 2 cut(s) 47, 213
Ecl136II GAGCTC 1 cut(s) 1184
Eco130I CCWWGG 2 cut(s) 102, 1177
Eco24I GRGCYC 1 cut(s) 1186
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 1138, 1169
Eco53kI GAGCTC 1 cut(s) 1184
Eco57I CTGAAG 3 cut(s) 378, 525, 915
EcoICRI GAGCTC 1 cut(s) 1184
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 538, 1073
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 2 cut(s) 102, 1177
EcoT38I GRGCYC 1 cut(s) 1186
ErhI CCWWGG 2 cut(s) 102, 1177
FaeI CATG 4 cut(s) 36, 106, 115, 1198
FalI AAGNNNNNCTT 2 cut(s) 736, 768
FatI CATG 4 cut(s) 32, 102, 111, 1194
FauI CCCGC 3 cut(s) 283, 612, 1056
FbaI TGATCA 1 cut(s) 372
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 6, 28
FokI GGATG 7 cut(s) 36, 119, 212, 281, 407, 1037, 1169
FriOI GRGCYC 1 cut(s) 1186
Fsp4HI GCNGC 2 cut(s) 6, 28
FspBI CTAG 2 cut(s) 96, 605
GlaI GCGC 3 cut(s) 511, 544, 618
GluI GCNGC 2 cut(s) 6, 28
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 1 cut(s) 609
HapII CCGG 4 cut(s) 197, 946, 976, 1122
HgaI GACGC 2 cut(s) 48, 509
HhaI GCGC 3 cut(s) 512, 545, 619
Hin1II CATG 4 cut(s) 36, 106, 115, 1198
Hin6I GCGC 3 cut(s) 510, 543, 617
HinP1I GCGC 3 cut(s) 510, 543, 617
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 4 cut(s) 292, 329, 431, 1132
HpaII CCGG 4 cut(s) 197, 946, 976, 1122
HphI GGTGA 3 cut(s) 398, 728, 845
Hpy166II GTNNAC 2 cut(s) 124, 730
Hpy188I TCNGA 5 cut(s) 75, 286, 555, 909, 1024
Hpy188III TCNNGA 7 cut(s) 66, 206, 531, 799, 812, 933, 1136
Hpy8I GTNNAC 2 cut(s) 124, 730
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 3 cut(s) 500, 824, 976
HpyCH4III ACNGT 3 cut(s) 121, 410, 778
HpyCH4V TGCA 5 cut(s) 194, 460, 730, 857, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 314, 362, 509, 623, 727
HpyF3I CTNAG 9 cut(s) 183, 366, 477, 485, 552, 627, 712, 879, 1089
Hsp92II CATG 4 cut(s) 36, 106, 115, 1198
HspAI GCGC 3 cut(s) 510, 543, 617
Ksp22I TGATCA 1 cut(s) 372
KspI CCGCGG 1 cut(s) 1064
Kzo9I GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 1181
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 6 cut(s) 14, 190, 385, 469, 815, 1201
MaeI CTAG 2 cut(s) 96, 605
MaeIII GTNAC 3 cut(s) 251, 916, 1094
MalI GATC 9 cut(s) 273, 312, 374, 454, 492, 535, 867, 962, 1204
MboI GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
MfeI CAATTG 3 cut(s) 131, 380, 1206
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 2 cut(s) 732, 1186
MluCI AATT 5 cut(s) 131, 302, 380, 686, 1206
MnlI CCTC 6 cut(s) 103, 344, 353, 716, 754, 856
MseI TTAA 2 cut(s) 162, 177
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 1063
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 4 cut(s) 197, 946, 976, 1122
MspR9I CCNGG 2 cut(s) 540, 1075
MunI CAATTG 3 cut(s) 131, 380, 1206
MvaI CCWGG 2 cut(s) 540, 1075
MvnI CGCG 3 cut(s) 617, 619, 1063
MwoI GCNNNNNNNGC 6 cut(s) 200, 314, 362, 509, 623, 727
NcoI CCATGG 1 cut(s) 102
NdeII GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
NlaIII CATG 4 cut(s) 36, 106, 115, 1198
NlaIV GGNNCC 1 cut(s) 1059
NmuCI GTSAC 1 cut(s) 1094
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 4 cut(s) 292, 329, 431, 1132
PflFI GACNNNGTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 1178
PinAI ACCGGT 3 cut(s) 945, 975, 1121
PkrI GCNGC 2 cut(s) 7, 29
Psp124BI GAGCTC 1 cut(s) 1186
Psp6I CCWGG 2 cut(s) 538, 1073
PspGI CCWGG 2 cut(s) 538, 1073
PspN4I GGNNCC 1 cut(s) 1059
PspPI GGNCC 2 cut(s) 1138, 1169
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 465
SacI GAGCTC 1 cut(s) 1186
SacII CCGCGG 1 cut(s) 1064
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 162, 177
SatI GCNGC 2 cut(s) 6, 28
Sau3AI GATC 9 cut(s) 271, 310, 372, 452, 490, 533, 865, 960, 1202
Sau96I GGNCC 2 cut(s) 1138, 1169
ScrFI CCNGG 2 cut(s) 540, 1075
SduI GDGCHC 2 cut(s) 732, 1186
SfaNI GCATC 6 cut(s) 14, 190, 385, 469, 815, 1201
SfcI CTRYAG 1 cut(s) 399
Sfr303I CCGCGG 1 cut(s) 1064
SgrBI CCGCGG 1 cut(s) 1064
SinI GGWCC 2 cut(s) 1138, 1169
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 3 cut(s) 176, 206, 799
SmoI CTYRAG 3 cut(s) 176, 206, 799
Sse9I AATT 5 cut(s) 131, 302, 380, 686, 1206
SsiI CCGC 6 cut(s) 5, 276, 619, 733, 1061, 1063
SspMI CTAG 2 cut(s) 96, 605
SstI GAGCTC 1 cut(s) 1186
StyD4I CCNGG 2 cut(s) 538, 1073
StyI CCWWGG 2 cut(s) 102, 1177
TaaI ACNGT 3 cut(s) 121, 410, 778
TaqI TCGA 7 cut(s) 67, 88, 313, 327, 441, 690, 1038
TaqII GACCGA 1 cut(s) 1138
TasI AATT 5 cut(s) 131, 302, 380, 686, 1206
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 292, 329, 431, 1132
Tru1I TTAA 2 cut(s) 162, 177
Tru9I TTAA 2 cut(s) 162, 177
TscAI CASTG 1 cut(s) 230
TseFI GTSAC 1 cut(s) 1094
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 1094
TspDTI ATGAA 1 cut(s) 423
TspRI CASTG 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 1178
Vha464I CTTAAG 1 cut(s) 176
VneI GTGCAC 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 1138, 1169
XapI RAATTY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 908
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 96, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.