Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015305.1

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

34167 .. 38434

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015305.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggccgccgagtccgcattcgtcagaaatggcgggagcagcagcagcgcagccactgctgccttattcggcagctcaacgtggaaacattccaagagaaagacccagcagtctctacacacgcactgcgcccatgacaagaacaggttctacaaacaactgggattattttcattgaaaaagaagattgaagatgctgttctccgagctgagatgttggccccattggcactggagcttgaagaagaaagacggaatgagcaggaacaactgatgcgcgactatgacctatgggatgacactgctgagtccagtgaggttcttgctaaattggctgatagtgttagagtggttgacgctctcagagacttgacatataaggctgaagaagcaaaacttattacacagttagcagagatatatgctatcaattatgggctttttaggaaggcatatgatgcatctctggatatgagcaagattttgaataaatatgagatttccaagcttcttaagggaccatatgacatggagggagcatgtctaattataaaagctggtggcacaggctaccctgaggaagatttagttattgtattgccatcaaagcttgaagaaaagcagagccaaaatggtcctttagtttacattcaccataaacccacaggcataagtgtccaatcatcaggtgagaggagccactttgcaaataagatgaaagccatgaaccgattgaaagccaagcttctcatccttgcattggaacaaggagttaacaagcctagtgatattaagaaagatgagattgtcaatgtatggcaaaaggagactcgaagatacatgtctcatccacataagttagtcaaggatttaaaaacgggtatccaactacctgaccttatgtctgttttgggtggaaatcttgaacctcttattgctgctcatattactataagacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

320

Amino Acids

35.95

Weight (kDa)

8.76

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AasI	GACNNNNNNGTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	279
AciI	CCGC	3 cut(s)	6, 15, 33
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	760
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	7 cut(s)	178, 191, 242, 487, 614, 736, 926
AhdI	GACNNNNNGTC	1 cut(s)	901
AluBI	AGCT	7 cut(s)	75, 209, 238, 508, 557, 610, 745
AluI	AGCT	7 cut(s)	75, 209, 238, 508, 557, 610, 745
Alw26I	GTCTC	4 cut(s)	117, 360, 821, 849
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	3, 219
ApeKI	GCWGC	7 cut(s)	39, 42, 45, 50, 59, 72, 938
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	3 cut(s)	50, 131, 279
AspS9I	GGNCC	3 cut(s)	220, 518, 635
AsuHPI	GGTGA	2 cut(s)	644, 701
AvaII	GGWCC	2 cut(s)	518, 635
AxyI	CCTNAGG	1 cut(s)	576
BbvI	GCAGC	7 cut(s)	46, 51, 54, 57, 62, 84, 925
BccI	CCATC	1 cut(s)	610
BciVI	GTATCC	1 cut(s)	893
BcoDI	GTCTC	4 cut(s)	117, 360, 821, 849
BfaI	CTAG	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	893
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	8 cut(s)	6, 40, 43, 46, 51, 60, 73, 939
BlsI	GCNGC	8 cut(s)	7, 41, 44, 47, 52, 61, 74, 940
Bme18I	GGWCC	2 cut(s)	518, 635
BmeRI	GACNNNNNGTC	1 cut(s)	901
BmgT120I	GGNCC	3 cut(s)	220, 518, 635
BmiI	GGNNCC	3 cut(s)	222, 519, 698
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	4 cut(s)	184, 264, 448, 470
BmuI	ACTGGG	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse1I	ACTGG	3 cut(s)	165, 237, 312
Bse21I	CCTNAGG	1 cut(s)	576
BseGI	GGATG	3 cut(s)	301, 750, 847
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMII	CTCAG	4 cut(s)	201, 297, 376, 567
BseNI	ACTGG	3 cut(s)	165, 237, 312
BseRI	GAGGAG	1 cut(s)	709
BseXI	GCAGC	7 cut(s)	46, 51, 54, 57, 62, 84, 925
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	5, 221
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	4 cut(s)	117, 360, 821, 849
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	5, 221
BspACI	CCGC	3 cut(s)	6, 15, 33
BspANI	GGCC	2 cut(s)	5, 221
BspCNI	CTCAG	4 cut(s)	202, 298, 375, 568
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	222, 519, 698
BspTI	CTTAAG	1 cut(s)	512
BsrI	ACTGG	3 cut(s)	165, 237, 312
Bst4CI	ACNGT	2 cut(s)	408, 960
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	2 cut(s)	56, 458
BstDEI	CTNAG	4 cut(s)	210, 306, 362, 576
BstF5I	GGATG	3 cut(s)	301, 750, 847
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	3 cut(s)	50, 131, 279
BstMAI	GTCTC	4 cut(s)	117, 360, 821, 849
BstNSI	RCATGY	2 cut(s)	543, 844
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	7 cut(s)	46, 51, 54, 57, 62, 84, 925
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	893
BsuRI	GGCC	2 cut(s)	5, 221
BtsCI	GGATG	3 cut(s)	301, 750, 847
BtsI	GCAGTG	3 cut(s)	54, 124, 300
BtsIMutI	CAGTG	5 cut(s)	54, 124, 230, 300, 319
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	3 cut(s)	50, 131, 279
Cfr13I	GGNCC	3 cut(s)	220, 518, 635
CseI	GACGC	1 cut(s)	365
CviAII	CATG	5 cut(s)	134, 529, 540, 724, 841
DdeI	CTNAG	4 cut(s)	210, 306, 362, 576
DraI	TTTAAA	1 cut(s)	873
DrdI	GACNNNNNNGTC	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	901
Eco47I	GGWCC	2 cut(s)	518, 635
Eco57I	CTGAAG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	463
FaeI	CATG	5 cut(s)	137, 532, 543, 727, 844
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 729, 761
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	5 cut(s)	133, 528, 539, 723, 840
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	2 cut(s)	454, 523
Fnu4HI	GCNGC	8 cut(s)	6, 40, 43, 46, 51, 60, 73, 939
FokI	GGATG	3 cut(s)	308, 737, 834
Fsp4HI	GCNGC	8 cut(s)	6, 40, 43, 46, 51, 60, 73, 939
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	3 cut(s)	49, 130, 278
GluI	GCNGC	8 cut(s)	6, 40, 43, 46, 51, 60, 73, 939
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	5, 221
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	3 cut(s)	50, 131, 279
Hin1II	CATG	5 cut(s)	137, 532, 543, 727, 844
Hin6I	GCGC	3 cut(s)	48, 129, 277
HinP1I	GCGC	3 cut(s)	48, 129, 277
HincII	GTYRAC	2 cut(s)	355, 775
HindII	GTYRAC	2 cut(s)	355, 775
HindIII	AAGCTT	3 cut(s)	506, 608, 743
HinfI	GANTC	3 cut(s)	11, 308, 829
HpaI	GTTAAC	1 cut(s)	775
HphI	GGTGA	2 cut(s)	644, 701
Hpy166II	GTNNAC	3 cut(s)	355, 646, 775
Hpy188I	TCNGA	3 cut(s)	26, 206, 365
Hpy188III	TCNNGA	2 cut(s)	467, 923
Hpy8I	GTNNAC	3 cut(s)	355, 646, 775
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	2 cut(s)	408, 960
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	461, 707, 758
HpyF3I	CTNAG	4 cut(s)	210, 306, 362, 576
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	5 cut(s)	137, 532, 543, 727, 844
HspAI	GCGC	3 cut(s)	48, 129, 277
KspAI	GTTAAC	1 cut(s)	775
LmnI	GCTCC	4 cut(s)	36, 235, 536, 696
Lsp1109I	GCAGC	7 cut(s)	46, 51, 54, 57, 62, 84, 925
LweI	GCATC	4 cut(s)	184, 264, 448, 470
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	80
MboII	GAAGA	8 cut(s)	196, 203, 254, 257, 398, 593, 626, 846
MluCI	AATT	3 cut(s)	329, 430, 546
MlyI	GAGTC	3 cut(s)	20, 317, 823
MmeI	TCCRAC	1 cut(s)	910
MnlI	CCTC	5 cut(s)	310, 526, 571, 687, 939
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	4 cut(s)	513, 774, 792, 872
MspCI	CTTAAG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	17
MvnI	CGCG	1 cut(s)	279
NdeI	CATATG	2 cut(s)	454, 523
NlaIII	CATG	5 cut(s)	137, 532, 543, 727, 844
NlaIV	GGNNCC	3 cut(s)	222, 519, 698
NmeAIII	GCCGAG	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	2 cut(s)	543, 844
PciI	ACATGT	1 cut(s)	840
PctI	GAATGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	146
PkrI	GCNGC	8 cut(s)	7, 41, 44, 47, 52, 61, 74, 940
PleI	GAGTC	3 cut(s)	19, 316, 823
PpsI	GAGTC	3 cut(s)	19, 316, 823
PscI	ACATGT	1 cut(s)	840
PsiI	TTATAA	1 cut(s)	551
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	222, 519, 698
PspPI	GGNCC	3 cut(s)	220, 518, 635
PsrI	GAACNNNNNNTAC	2 cut(s)	134, 166
PstNI	CAGNNNCTG	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	513, 774, 792, 872
SatI	GCNGC	8 cut(s)	6, 40, 43, 46, 51, 60, 73, 939
Sau96I	GGNCC	3 cut(s)	220, 518, 635
SchI	GAGTC	3 cut(s)	20, 317, 823
SfaNI	GCATC	4 cut(s)	184, 264, 448, 470
SinI	GGWCC	2 cut(s)	518, 635
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	329, 430, 546
SsiI	CCGC	3 cut(s)	6, 15, 33
SspMI	CTAG	1 cut(s)	783
TaaI	ACNGT	2 cut(s)	408, 960
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	832
TasI	AATT	3 cut(s)	329, 430, 546
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	513, 774, 792, 872
Tru9I	TTAA	4 cut(s)	513, 774, 792, 872
TscAI	CASTG	5 cut(s)	61, 131, 237, 307, 319
TseI	GCWGC	7 cut(s)	39, 42, 45, 50, 59, 72, 938
TspDTI	ATGAA	3 cut(s)	162, 731, 740
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	5 cut(s)	61, 131, 237, 307, 319
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	518, 635
XceI	RCATGY	2 cut(s)	543, 844
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.