Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018973.1

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 417

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018973.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atgacctctgggatgacactgcttgctgttctccgagctgagatgttggccccattggcactggagcttgaagaagaaagacggaatgagcaagaacaactgatacacgaccatgacctctgggatgacactgctgagtccaatgaggttcttgccaaattggctgatagtgttagagtggttgatgctctcagagacttgacatataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

70

Amino Acids

7.99

Weight (kDa)

4.4

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	2 cut(s)	38, 67
AluI	AGCT	2 cut(s)	38, 67
Alw26I	GTCTC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	189
BglI	GCCNNNNNGGC	2 cut(s)	56, 161
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	18, 130
BseMII	CTCAG	3 cut(s)	30, 126, 205
BseNI	ACTGG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	31, 127, 204
BspLI	GGNNCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	39, 135, 191
BstF5I	GGATG	2 cut(s)	18, 130
BstMAI	GTCTC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 161
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	18, 130
BtsI	GCAGTG	2 cut(s)	17, 129
BtsIMutI	CAGTG	3 cut(s)	17, 59, 129
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	4 cut(s)	38, 50, 67, 164
CviKI_1	RGCY	4 cut(s)	38, 50, 67, 164
DdeI	CTNAG	3 cut(s)	39, 135, 191
FaeI	CATG	1 cut(s)	116
FaiI	YATR	3 cut(s)	114, 205, 207
FatI	CATG	1 cut(s)	112
FokI	GGATG	2 cut(s)	25, 137
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	35, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 161
HpyF3I	CTNAG	3 cut(s)	39, 135, 191
Hsp92II	CATG	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	2 cut(s)	47, 106
LweI	GCATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	83, 86
MluCI	AATT	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	16, 128, 139
MslI	CAYNNNNRTG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	56, 161
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	49
PsrI	GAACNNNNNNTAC	2 cut(s)	87, 119
RseI	CAYNNNNRTG	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	146
SetI	ASST	5 cut(s)	8, 40, 69, 120, 150
SfaNI	GCATC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	158
TasI	AATT	1 cut(s)	158
TscAI	CASTG	3 cut(s)	24, 66, 136
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	3 cut(s)	24, 66, 136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.