Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

77677193 .. 77680757

Gene Structure 3565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGTAATTCGAGCTCTACTCCGACCGGGCTCAAGCCAACATCAAATCCAAAAATCTCACAGGTAACAACCCCCTCTCTCTTGCAATTTCCGATGCCTGGTCTTCCTCCTGTCACTTTTGACATGAGAGGAGTTGGGAGGTCAACTGGGAAGGCTTCTCTTACTGGGTTTAAGACTGAAGATGCTGTTCTCCGAGCTGAGATGTTGGCCCCATTGGCACTGGAGCTTGAAGAAGAAAGAAGGAATGAGCAAGAACAACTGATACACGACCATGACCTCTGGGATGACTCTGCTGAGTCCAATGAGGTTCTTGCCAAATTGGCTGATAGTGTTAGAGTGGTTGATGCTCTCAGAGACTTGATATATAAGGCTGAAGAAGCAAAACTTATTACACAGTTAGCAAAGATATATGCTATCAATTATGGGCTTTTTAGGAAGGCATATGATGCATCTCTGGATATGAGCAAGATTTTGAATAAATATGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGAGCATGTATAATTATAAAAGCTAGTGGCACAGGCTACCCTGAGGTTTCTGTAAAACAACAACTAAGCATGTATACCAAATGGGCCAGAAAGCTAGGTTACAAAGGAATGGTAGTAGAGATGCATTCTTCCACGAATGGTGGCATCAAGTCAGCAACTATTGAGTTTGCTTTTGGTTATCTATCAGGAGAGGTAGGTGTGCACTACATCATAAATTCTAAAAACGGATCTGCTGTGCATGAGGTCATTGAGGATTCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

261

Amino Acids

28.65

Weight (kDa)

5.81

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	79 - 243	2e-14	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	596
AclWI	GGATC	1 cut(s)	757
AcsI	RAATTY	1 cut(s)	736
AcuI	CTGAAG	2 cut(s)	198, 393
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	230, 475
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	6 cut(s)	15, 197, 226, 496, 545, 616
AluI	AGCT	6 cut(s)	15, 197, 226, 496, 545, 616
Alw21I	GWGCWC	2 cut(s)	17, 726
Alw26I	GTCTC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	722
AlwI	GGATC	1 cut(s)	757
AoxI	GGCC	2 cut(s)	207, 606
ApaLI	GTGCAC	1 cut(s)	722
ApoI	RAATTY	1 cut(s)	736
AspS9I	GGNCC	3 cut(s)	208, 506, 606
AsuC2I	CCSGG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	506
AxyI	CCTNAGG	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	726
BanII	GRGCYC	2 cut(s)	17, 33
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	17, 726
BciT130I	CCWGG	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	546, 617
BfrI	CTTAAG	1 cut(s)	500
BglI	GCCNNNNNGGC	2 cut(s)	215, 320
Bme1390I	CCNGG	2 cut(s)	28, 99
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	3 cut(s)	208, 506, 606
BmiI	GGNNCC	2 cut(s)	210, 507
BmrFI	CCNGG	2 cut(s)	28, 99
BmrI	ACTGGG	2 cut(s)	156, 174
BmsI	GCATC	7 cut(s)	84, 172, 334, 436, 458, 633, 675
BmuI	ACTGGG	2 cut(s)	156, 174
BpiI	GAAGAC	1 cut(s)	95
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	151, 169, 225
Bse21I	CCTNAGG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	4 cut(s)	189, 285, 364, 555
BseNI	ACTGG	3 cut(s)	151, 169, 225
BseRI	GAGGAG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	726
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	209, 608
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	17, 726
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	209, 608
Bsp1286I	GDGCHC	3 cut(s)	17, 33, 726
Bsp143I	GATC	1 cut(s)	749
BspANI	GGCC	2 cut(s)	209, 608
BspCNI	CTCAG	4 cut(s)	190, 286, 363, 556
BspLI	GGNNCC	2 cut(s)	210, 507
BspPI	GGATC	1 cut(s)	757
BspTI	CTTAAG	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	151, 169, 225
BssMI	GATC	1 cut(s)	749
BssNAI	GTATAC	1 cut(s)	597
Bst1107I	GTATAC	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	396
BstAFI	CTTAAG	1 cut(s)	500
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDEI	CTNAG	5 cut(s)	198, 294, 350, 564, 587
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	1 cut(s)	752
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	749
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 320, 377, 446
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	531, 595
BstSCI	CCNGG	2 cut(s)	26, 97
BstSLI	GKGCMC	1 cut(s)	726
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BstZ17I	GTATAC	1 cut(s)	597
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	209, 608
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	208, 506, 606
CviAII	CATG	6 cut(s)	124, 272, 517, 528, 592, 761
DdeI	CTNAG	5 cut(s)	198, 294, 350, 564, 587
DpnI	GATC	1 cut(s)	751
DpnII	GATC	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	17, 33
Eco47I	GGWCC	1 cut(s)	506
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	198, 393
Eco81I	CCTNAGG	1 cut(s)	564
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	97
EcoT22I	ATGCAT	2 cut(s)	451, 648
EcoT38I	GRGCYC	2 cut(s)	17, 33
FaeI	CATG	6 cut(s)	127, 275, 520, 531, 595, 764
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	6 cut(s)	123, 271, 516, 527, 591, 760
FauNDI	CATATG	2 cut(s)	442, 511
FblI	GTMKAC	1 cut(s)	596
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	2 cut(s)	17, 33
FspBI	CTAG	2 cut(s)	546, 617
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	209, 608
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	6 cut(s)	127, 275, 520, 531, 595, 764
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	287, 296, 776
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	3 cut(s)	144, 597, 724
Hpy188I	TCNGA	5 cut(s)	24, 93, 194, 353, 785
Hpy188III	TCNNGA	2 cut(s)	455, 708
Hpy8I	GTNNAC	3 cut(s)	144, 597, 724
HpyAV	CCTTC	3 cut(s)	145, 234, 430
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	85, 449, 646, 724, 760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 320, 377, 446
HpyF3I	CTNAG	5 cut(s)	198, 294, 350, 564, 587
Hsp92II	CATG	6 cut(s)	127, 275, 520, 531, 595, 764
Kzo9I	GATC	1 cut(s)	749
LmnI	GCTCC	2 cut(s)	223, 524
LweI	GCATC	7 cut(s)	84, 172, 334, 436, 458, 633, 675
MaeI	CTAG	2 cut(s)	546, 617
MaeIII	GTNAC	3 cut(s)	64, 112, 620
MalI	GATC	1 cut(s)	751
MboI	GATC	1 cut(s)	749
MboII	GAAGA	6 cut(s)	95, 191, 242, 245, 386, 642
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	3 cut(s)	17, 33, 726
MluCI	AATT	6 cut(s)	7, 86, 317, 418, 534, 736
MlyI	GAGTC	2 cut(s)	281, 305
MmeI	TCCRAC	1 cut(s)	47
Mph1103I	ATGCAT	2 cut(s)	451, 648
MseI	TTAA	2 cut(s)	171, 501
MslI	CAYNNNNRTG	1 cut(s)	270
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	28, 99
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	215, 320, 377, 446
NciI	CCSGG	1 cut(s)	28
NdeI	CATATG	2 cut(s)	442, 511
NdeII	GATC	1 cut(s)	749
NlaIII	CATG	6 cut(s)	127, 275, 520, 531, 595, 764
NlaIV	GGNNCC	2 cut(s)	210, 507
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	2 cut(s)	451, 648
NspI	RCATGY	2 cut(s)	531, 595
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	776
PleI	GAGTC	2 cut(s)	281, 304
PpsI	GAGTC	2 cut(s)	281, 304
PsiI	TTATAA	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	210, 507
PspPI	GGNCC	3 cut(s)	208, 506, 606
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
PsuI	RGATCY	1 cut(s)	749
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	171, 501
Sau3AI	GATC	1 cut(s)	749
Sau96I	GGNCC	3 cut(s)	208, 506, 606
SchI	GAGTC	2 cut(s)	281, 305
ScrFI	CCNGG	2 cut(s)	28, 99
SduI	GDGCHC	3 cut(s)	17, 33, 726
SfaNI	GCATC	7 cut(s)	84, 172, 334, 436, 458, 633, 675
SinI	GGWCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	32, 500
SmoI	CTYRAG	2 cut(s)	32, 500
Sse9I	AATT	6 cut(s)	7, 86, 317, 418, 534, 736
SspMI	CTAG	2 cut(s)	546, 617
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	26, 97
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	11
TasI	AATT	6 cut(s)	7, 86, 317, 418, 534, 736
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	2 cut(s)	171, 501
Tru9I	TTAA	2 cut(s)	171, 501
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	500
VneI	GTGCAC	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	2 cut(s)	531, 595
XmiI	GTMKAC	1 cut(s)	596
XspI	CTAG	2 cut(s)	546, 617
Zsp2I	ATGCAT	2 cut(s)	451, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.