Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Forward (+)

27012446 .. 27016787

Gene Structure 4342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACAACCTTCGAATTTCGCCAATCTCACACTCCAGCCGAGAAAGGTTTCAAAGCTGTCACTTTTGACATGAGAGGAGTTGGGAGGTCAACTGGGAAGGTTTCTCTTACTGGGTTTGTAGAAATCAAGGATGTGATTTCTGGCTACAATTTGGTCTCTAAGAATTTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGGATTATTTTCATTGAAAAAGAAGATTGAAGATGTTGTTCTCCGAGCTGAGATGTTGGCCCCATTGGCACTGGAGCTTGAAGAAGAAAGACGGAATGAGCAAGAACAACTGATACTCGACTATGACCTCTGGGATGACACTGCTGAGTCCAATGAGGTTCTTGCTAAATTGGCTGATAGTGTTAGAGTGGTTGATGCTCTAAGAGACTTGACATATAAATTAGCAGAGATAGATGCTATCAATTATGGGCTTTTTAGGAAAGCATATGATGCATCTCTGGATATGAGCAAGATTTTGAATAAATATGAGATTTCCAAGCTTCTTAAGGGACCATCTGACATGGAGGGAGCATGTCTAATTATAAAAGCTGGTGGAACAGGCTACCCTGAGATGCATTCTTCCACGAATAGTGGCATCAAGTCAGCAATTATTGAGGTTGAACATGAGTTTGCTTTTGGTTATCTATCAGGAGAGGCAGGTGTGCACTACATCATAAATTCTAAAAACGGATCTGCTGTGCATGAGGTACAACTCTGTCTTGTTGATATCAATCCAATATTAAACTGCTTGGACTTGTTTCTTGGTTTTGTGGATTGCAAAGACTTGGTTTTGTTTCTCCCCTATTTTGGTGTTAATCATGCATGCTTCTCTCCTGCATTCCACATATGCTATTTAAAAAAAAATTATGCAATATATGAACATCGTGTATTACCAGAAGATCTTATACTTAAATGGTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

315

Amino Acids

35.13

Weight (kDa)

5.36

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AarI	CACCTGC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	671
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	4 cut(s)	14, 163, 180, 700
AfaI	GTAC	1 cut(s)	732
AfiI	CCNNNNNNNGG	1 cut(s)	830
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	6 cut(s)	52, 220, 233, 284, 502, 644
AluBI	AGCT	5 cut(s)	56, 251, 280, 523, 572
AluI	AGCT	5 cut(s)	56, 251, 280, 523, 572
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	2 cut(s)	160, 402
Alw44I	GTGCAC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	721
AoxI	GGCC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	686
ApoI	RAATTY	4 cut(s)	14, 163, 180, 700
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	262, 533, 939
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	533, 939
BaeGI	GKGCMC	1 cut(s)	690
BarI	GAAGNNNNNNTAC	2 cut(s)	912, 944
Bbv12I	GWGCWC	1 cut(s)	690
BccI	CCATC	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	160, 402
BfmI	CTRYAG	1 cut(s)	201
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	671
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	922
Bme18I	GGWCC	2 cut(s)	533, 939
BmgT120I	GGNCC	3 cut(s)	262, 533, 939
BmiI	GGNNCC	2 cut(s)	264, 534
BmrI	ACTGGG	2 cut(s)	102, 120
BmsI	GCATC	6 cut(s)	388, 427, 463, 485, 585, 627
BmuI	ACTGGG	2 cut(s)	102, 120
BpmI	CTGGAG	2 cut(s)	18, 296
Bpu14I	TTCGAA	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	753
BsaI	GGTCTC	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse1I	ACTGG	3 cut(s)	97, 115, 279
Bse8I	GATNNNNATC	1 cut(s)	753
BseGI	GGATG	2 cut(s)	136, 343
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMII	CTCAG	3 cut(s)	243, 339, 582
BseNI	ACTGG	3 cut(s)	97, 115, 279
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	690
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	2 cut(s)	160, 402
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	2 cut(s)	598, 860
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	2 cut(s)	713, 922
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	3 cut(s)	244, 340, 583
BspLI	GGNNCC	2 cut(s)	264, 534
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	160
BsrI	ACTGG	3 cut(s)	97, 115, 279
BssMI	GATC	2 cut(s)	713, 922
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	5 cut(s)	159, 252, 348, 404, 591
BstF5I	GGATG	2 cut(s)	136, 343
BstKTI	GATC	2 cut(s)	716, 925
BstMAI	GTCTC	2 cut(s)	160, 402
BstMBI	GATC	2 cut(s)	713, 922
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 374, 473
BstNSI	RCATGY	2 cut(s)	558, 849
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	690
BstX2I	RGATCY	2 cut(s)	713, 922
BstYI	RGATCY	2 cut(s)	713, 922
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	136, 343
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	272, 342
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	1 cut(s)	847
Cfr13I	GGNCC	3 cut(s)	262, 533, 939
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	7 cut(s)	70, 544, 555, 647, 725, 842, 846
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	5 cut(s)	159, 252, 348, 404, 591
DpnI	GATC	2 cut(s)	715, 924
DpnII	GATC	2 cut(s)	713, 922
DraI	TTTAAA	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	533, 939
EcoRV	GATATC	1 cut(s)	751
EcoT22I	ATGCAT	3 cut(s)	478, 600, 847
FaeI	CATG	7 cut(s)	73, 547, 558, 650, 728, 845, 849
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	7 cut(s)	69, 543, 554, 646, 724, 841, 845
FauNDI	CATATG	2 cut(s)	469, 869
FokI	GGATG	2 cut(s)	143, 350
GsuI	CTGGAG	2 cut(s)	18, 296
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	7 cut(s)	73, 547, 558, 650, 728, 845, 849
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	90, 688
Hpy188I	TCNGA	2 cut(s)	248, 541
Hpy188III	TCNNGA	2 cut(s)	482, 672
Hpy8I	GTNNAC	2 cut(s)	90, 688
HpyAV	CCTTC	2 cut(s)	19, 91
HpyCH4V	TGCA	9 cut(s)	203, 476, 598, 688, 724, 801, 845, 860, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 374, 473
HpyF3I	CTNAG	5 cut(s)	159, 252, 348, 404, 591
Hsp92II	CATG	7 cut(s)	73, 547, 558, 650, 728, 845, 849
Kzo9I	GATC	2 cut(s)	713, 922
LmnI	GCTCC	2 cut(s)	277, 551
LweI	GCATC	6 cut(s)	388, 427, 463, 485, 585, 627
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	715, 924
MboI	GATC	2 cut(s)	713, 922
MboII	GAAGA	7 cut(s)	189, 238, 245, 296, 299, 594, 932
MflI	RGATCY	2 cut(s)	713, 922
MhlI	GDGCHC	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	8 cut(s)	68, 78, 341, 352, 541, 631, 670, 721
Mph1103I	ATGCAT	3 cut(s)	478, 600, 847
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	5 cut(s)	528, 764, 837, 878, 933
MspCI	CTTAAG	1 cut(s)	527
Mva1269I	GAATGC	2 cut(s)	598, 860
MwoI	GCNNNNNNNGC	3 cut(s)	269, 374, 473
NdeI	CATATG	2 cut(s)	469, 869
NdeII	GATC	2 cut(s)	713, 922
NlaIII	CATG	7 cut(s)	73, 547, 558, 650, 728, 845, 849
NlaIV	GGNNCC	2 cut(s)	264, 534
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	3 cut(s)	478, 600, 847
NspI	RCATGY	2 cut(s)	558, 849
NspV	TTCGAA	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	849
PaqCI	CACCTGC	1 cut(s)	671
PctI	GAATGC	2 cut(s)	598, 860
PdmI	GAANNNNTTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PsiI	TTATAA	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	264, 534
PspPI	GGNCC	3 cut(s)	262, 533, 939
PsrI	GAACNNNNNNTAC	2 cut(s)	300, 332
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	713, 922
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
SaqAI	TTAA	5 cut(s)	528, 764, 837, 878, 933
Sau3AI	GATC	2 cut(s)	713, 922
Sau96I	GGNCC	3 cut(s)	262, 533, 939
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	6 cut(s)	388, 427, 463, 485, 585, 627
SfcI	CTRYAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	2 cut(s)	533, 939
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SphI	GCATGC	1 cut(s)	849
SspI	AATATT	1 cut(s)	762
TaqI	TCGA	2 cut(s)	12, 321
Tru1I	TTAA	5 cut(s)	528, 764, 837, 878, 933
Tru9I	TTAA	5 cut(s)	528, 764, 837, 878, 933
TscAI	CASTG	2 cut(s)	279, 349
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	204, 915
TspGWI	ACGGA	2 cut(s)	310, 726
TspRI	CASTG	2 cut(s)	279, 349
Vha464I	CTTAAG	1 cut(s)	527
VneI	GTGCAC	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	533, 939
XapI	RAATTY	4 cut(s)	14, 163, 180, 700
XceI	RCATGY	2 cut(s)	558, 849
XmnI	GAANNNNTTC	1 cut(s)	47
Zsp2I	ATGCAT	3 cut(s)	478, 600, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.