Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

7650496 .. 7654064

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCAAGCTTGGCCGCAGAATCCGCGTTTCTCAGAAATGGTACCACCACCGCCGCCGCTGCTTCCGCCGCCGCTGCCTTATTCAGCTTCAATTGGAAAACTTCCCAAAGAAAGAGCCACCGGTCGCTACACACTCATTGCGTGGATGACAGGAACAGGGCCTCCAAACAACTGGGATTATTTTCATTGAAGAAGAAGATTGAAGATACAGTTCTCAGAGCTGAGACGTTGGCTCCAATGGCATTGGAACTTGAAGAAGCACGAAGAAATAAGCAGGAACAACAGATACGAGACTATAACCTTTGGGATGACACAGCAAAGTCTAATGAGATTCTTGCTAAGTTAGCTACCAGTGCTAAAGTGGTTGATGCTCTTAAAGACTTGACATTTAAGGCTGAAGAAGCAAAGCTAATAACACAGTTAGCAGAGGTAGACGCTATAAATTATGGGCTTTTTAGGCAAGCATATGATGCCTCTCTAGATGTAAGCAAGCTTTTGGATCAGTATGAGATGTCCAAGCTTCTGAAGGGACCATATGACATGGAGGGAGCATGTCTAACTATCGAAGCTGGAGGTGAAGGCTACCCTGAGGTATGGGTAAAACAACTACTGAGCATGTATACCAAATGGGCCAAAAAGCTAGGTTATAATGGGAGGGTAGTCGAGAAGCATTCTTCCACAAATGGTGGCATCACATCAGCAACTATTGAGTTTGAATTTGCATTTGCTTATGGGTATCTTTCAGGAGAGACAGGTGTTCACTATCTTACAAGCTCACAAAATGTGTCTGATTTGCCTACGGCTAGCTCAGCAAGTGTGGATGTGTTTCCTTTGTTTCTTGGAAAAGCCCATGACCTAGAAATTGACGACAACGACTTGGTCATTGCATTGCCATTGGTGCTTGAAGAGCAGCGCCAAACTGGACCTACAGTATCCATCCAGCATAAACTTACAGGCATAAGTGCTCAATCATCAGGCGAGAGGAGTCACTTTGCAAATAAGATCAAGGCAATTAACCGGTTGAAAGGCAAGCTTCTGATCCTTGCATTGGAACAAGGTGTTAGCGAGGTTAGCAATATCAAGAAAGATGAGATTGTGAATCTGTGGGAGAAGGAGACGAGAAGGTACATGTCTTATCCACACAAGCTGGTCAAGGATGTAAAAACAGGCATCCAACTACCTGATCTAATGTCTGTTTTAGACGGAAATCTTGAACCTCTTATTGGTGCTCATATTAACACAAGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

417

Amino Acids

46.05

Weight (kDa)

6.4

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	2 cut(s)	432, 620
AccII	CGCG	1 cut(s)	26
AciI	CCGC	8 cut(s)	15, 24, 51, 54, 57, 66, 69, 72
AclWI	GGATC	2 cut(s)	507, 1033
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	2 cut(s)	417, 545
AfaI	GTAC	2 cut(s)	43, 1127
AfiI	CCNNNNNNNGG	2 cut(s)	1048, 1223
AflIII	ACRYGT	1 cut(s)	1128
AgeI	ACCGGT	2 cut(s)	120, 1017
AgsI	TTSAA	8 cut(s)	91, 190, 203, 254, 716, 905, 1024, 1214
AjuI	GAANNNNNNNTTGG	2 cut(s)	1206, 1238
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
Alw21I	GWGCWC	2 cut(s)	967, 1231
Alw26I	GTCTC	4 cut(s)	218, 285, 743, 1109
AlwI	GGATC	2 cut(s)	507, 1033
AoxI	GGCC	3 cut(s)	12, 159, 630
ApeKI	GCWGC	3 cut(s)	59, 74, 910
ApoI	RAATTY	1 cut(s)	716
AsiGI	ACCGGT	2 cut(s)	120, 1017
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	4 cut(s)	159, 530, 630, 923
AsuHPI	GGTGA	1 cut(s)	587
AsuNHI	GCTAGC	1 cut(s)	803
AvaII	GGWCC	2 cut(s)	530, 923
AxyI	CCTNAGG	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	967, 1231
BbvI	GCAGC	3 cut(s)	46, 61, 922
BccI	CCATC	1 cut(s)	944
BceAI	ACGGC	1 cut(s)	816
BciVI	GTATCC	1 cut(s)	943
BcoDI	GTCTC	4 cut(s)	218, 285, 743, 1109
BfaI	CTAG	4 cut(s)	479, 641, 804, 857
BfmI	CTRYAG	1 cut(s)	927
BfoI	RGCGCY	1 cut(s)	916
BfuI	GTATCC	1 cut(s)	943
BisI	GCNGC	8 cut(s)	15, 54, 57, 60, 69, 72, 75, 911
BlpI	GCTNAGC	1 cut(s)	808
BlsI	GCNGC	8 cut(s)	16, 55, 58, 61, 70, 73, 76, 912
Bme18I	GGWCC	2 cut(s)	530, 923
BmgT120I	GGNCC	4 cut(s)	159, 530, 630, 923
BmiI	GGNNCC	3 cut(s)	43, 234, 531
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	4 cut(s)	358, 460, 699, 1179
BmtI	GCTAGC	1 cut(s)	807
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	808
BsaWI	WCCGGW	2 cut(s)	120, 1017
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	1048, 1223
Bse118I	RCCGGY	2 cut(s)	120, 1017
Bse1I	ACTGG	3 cut(s)	177, 351, 925
Bse21I	CCTNAGG	1 cut(s)	588
Bse3DI	GCAATG	3 cut(s)	136, 882, 887
BseGI	GGATG	6 cut(s)	151, 313, 826, 936, 1162, 1170
BseLI	CCNNNNNNNGG	2 cut(s)	1048, 1223
BseMI	GCAATG	3 cut(s)	136, 882, 887
BseMII	CTCAG	6 cut(s)	46, 213, 229, 579, 602, 822
BseNI	ACTGG	3 cut(s)	177, 351, 925
BseRI	GAGGAG	1 cut(s)	997
BseXI	GCAGC	3 cut(s)	46, 61, 922
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	3 cut(s)	14, 161, 632
BshNI	GGYRCC	1 cut(s)	41
BshTI	ACCGGT	2 cut(s)	120, 1017
BsiEI	CGRYCG	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	967, 1231
BsiSI	CCGG	2 cut(s)	121, 1018
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	2 cut(s)	1048, 1223
BsmAI	GTCTC	4 cut(s)	218, 285, 743, 1109
BsmBI	CGTCTC	2 cut(s)	218, 1109
BsmFI	GGGAC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	3 cut(s)	14, 161, 632
Bsp1286I	GDGCHC	2 cut(s)	967, 1231
Bsp143I	GATC	4 cut(s)	499, 1002, 1038, 1183
Bsp1720I	GCTNAGC	1 cut(s)	808
BspACI	CCGC	8 cut(s)	15, 24, 51, 54, 57, 66, 69, 72
BspANI	GGCC	3 cut(s)	14, 161, 632
BspCNI	CTCAG	6 cut(s)	45, 214, 228, 580, 603, 821
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	43, 234, 531
BspOI	GCTAGC	1 cut(s)	807
BspPI	GGATC	2 cut(s)	507, 1033
BspQI	GCTCTTC	1 cut(s)	900
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	3 cut(s)	136, 882, 887
BsrFI	RCCGGY	2 cut(s)	120, 1017
BsrI	ACTGG	3 cut(s)	177, 351, 925
BssAI	RCCGGY	2 cut(s)	120, 1017
BssMI	GATC	4 cut(s)	499, 1002, 1038, 1183
BssNAI	GTATAC	1 cut(s)	621
Bst1107I	GTATAC	1 cut(s)	621
Bst4CI	ACNGT	4 cut(s)	211, 420, 931, 1248
Bst6I	CTCTTC	1 cut(s)	900
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	5 cut(s)	7, 462, 491, 805, 1031
BstDEI	CTNAG	7 cut(s)	32, 215, 222, 339, 588, 611, 808
BstF5I	GGATG	6 cut(s)	151, 313, 826, 936, 1162, 1170
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	916
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	4 cut(s)	502, 1005, 1041, 1186
BstMAI	GTCTC	4 cut(s)	218, 285, 743, 1109
BstMBI	GATC	4 cut(s)	499, 1002, 1038, 1183
BstMCI	CGRYCG	1 cut(s)	125
BstNSI	RCATGY	3 cut(s)	555, 619, 1132
BstSFI	CTRYAG	1 cut(s)	927
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	46, 61, 922
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	3 cut(s)	14, 161, 632
BtsCI	GGATG	6 cut(s)	151, 313, 826, 936, 1162, 1170
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	5 cut(s)	7, 462, 491, 805, 1031
CfoI	GCGC	1 cut(s)	915
Cfr10I	RCCGGY	2 cut(s)	120, 1017
Cfr13I	GGNCC	4 cut(s)	159, 530, 630, 923
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	42, 1126
CspAI	ACCGGT	2 cut(s)	120, 1017
CviAII	CATG	5 cut(s)	541, 552, 616, 851, 1129
CviQI	GTAC	2 cut(s)	42, 1126
DdeI	CTNAG	7 cut(s)	32, 215, 222, 339, 588, 611, 808
DpnI	GATC	4 cut(s)	501, 1004, 1040, 1185
DpnII	GATC	4 cut(s)	499, 1002, 1038, 1183
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
EciI	GGCGGA	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	530, 923
Eco57I	CTGAAG	2 cut(s)	417, 545
Eco81I	CCTNAGG	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	159
Esp3I	CGTCTC	2 cut(s)	218, 1109
FaeI	CATG	5 cut(s)	544, 555, 619, 854, 1132
FalI	AAGNNNNNCTT	2 cut(s)	1017, 1049
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	5 cut(s)	540, 551, 615, 850, 1128
FauNDI	CATATG	2 cut(s)	466, 535
FblI	GTMKAC	2 cut(s)	432, 620
Fnu4HI	GCNGC	8 cut(s)	15, 54, 57, 60, 69, 72, 75, 911
FokI	GGATG	6 cut(s)	158, 320, 833, 923, 1157, 1169
Fsp4HI	GCNGC	8 cut(s)	15, 54, 57, 60, 69, 72, 75, 911
FspBI	CTAG	4 cut(s)	479, 641, 804, 857
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	8 cut(s)	15, 54, 57, 60, 69, 72, 75, 911
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	916
HaeIII	GGCC	3 cut(s)	14, 161, 632
HapII	CCGG	2 cut(s)	121, 1018
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	915
Hin1II	CATG	5 cut(s)	544, 555, 619, 854, 1132
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HindIII	AAGCTT	4 cut(s)	7, 491, 518, 1031
HinfI	GANTC	4 cut(s)	20, 331, 985, 1099
HpaII	CCGG	2 cut(s)	121, 1018
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	3 cut(s)	433, 621, 760
Hpy188I	TCNGA	5 cut(s)	35, 218, 525, 790, 1038
Hpy188III	TCNNGA	5 cut(s)	479, 664, 744, 1081, 1211
Hpy8I	GTNNAC	3 cut(s)	433, 621, 760
HpyAV	CCTTC	4 cut(s)	520, 572, 1105, 1116
HpyCH4III	ACNGT	4 cut(s)	211, 420, 931, 1248
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	4 cut(s)	722, 887, 995, 1046
HpyF3I	CTNAG	7 cut(s)	32, 215, 222, 339, 588, 611, 808
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	5 cut(s)	544, 555, 619, 854, 1132
HspAI	GCGC	1 cut(s)	913
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	499, 1002, 1038, 1183
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	2 cut(s)	238, 548
Lsp1109I	GCAGC	3 cut(s)	46, 61, 922
LweI	GCATC	4 cut(s)	358, 460, 699, 1179
MaeI	CTAG	4 cut(s)	479, 641, 804, 857
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	986
MalI	GATC	4 cut(s)	501, 1004, 1040, 1185
MboI	GATC	4 cut(s)	499, 1002, 1038, 1183
MboII	GAAGA	9 cut(s)	202, 205, 208, 215, 266, 276, 410, 666, 917
MfeI	CAATTG	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	967, 1231
MluCI	AATT	5 cut(s)	91, 442, 716, 861, 1011
MlyI	GAGTC	1 cut(s)	994
MmeI	TCCRAC	1 cut(s)	1198
MseI	TTAA	4 cut(s)	375, 390, 1014, 1236
MspA1I	CMGCKG	2 cut(s)	59, 74
MspI	CCGG	2 cut(s)	121, 1018
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	670
MvnI	CGCG	1 cut(s)	26
NdeI	CATATG	2 cut(s)	466, 535
NdeII	GATC	4 cut(s)	499, 1002, 1038, 1183
NheI	GCTAGC	1 cut(s)	803
NlaIII	CATG	5 cut(s)	544, 555, 619, 854, 1132
NlaIV	GGNNCC	3 cut(s)	43, 234, 531
NmuCI	GTSAC	1 cut(s)	986
NspI	RCATGY	3 cut(s)	555, 619, 1132
PciI	ACATGT	1 cut(s)	1128
PciSI	GCTCTTC	1 cut(s)	900
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	20, 331, 1099
PflFI	GACNNNGTC	1 cut(s)	878
PinAI	ACCGGT	2 cut(s)	120, 1017
PkrI	GCNGC	8 cut(s)	16, 55, 58, 61, 70, 73, 76, 912
PleI	GAGTC	1 cut(s)	993
PpsI	GAGTC	1 cut(s)	993
PscI	ACATGT	1 cut(s)	1128
PsiI	TTATAA	1 cut(s)	648
PspN4I	GGNNCC	3 cut(s)	43, 234, 531
PspPI	GGNCC	4 cut(s)	159, 530, 630, 923
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PsyI	GACNNNGTC	1 cut(s)	878
RsaI	GTAC	2 cut(s)	43, 1127
RsaNI	GTAC	2 cut(s)	42, 1126
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	375, 390, 1014, 1236
SatI	GCNGC	8 cut(s)	15, 54, 57, 60, 69, 72, 75, 911
Sau3AI	GATC	4 cut(s)	499, 1002, 1038, 1183
Sau96I	GGNCC	4 cut(s)	159, 530, 630, 923
SchI	GAGTC	1 cut(s)	994
SduI	GDGCHC	2 cut(s)	967, 1231
SfaNI	GCATC	4 cut(s)	358, 460, 699, 1179
SfcI	CTRYAG	1 cut(s)	927
SinI	GGWCC	2 cut(s)	530, 923
Sse9I	AATT	5 cut(s)	91, 442, 716, 861, 1011
SsiI	CCGC	8 cut(s)	15, 24, 51, 54, 57, 66, 69, 72
SspMI	CTAG	4 cut(s)	479, 641, 804, 857
TaaI	ACNGT	4 cut(s)	211, 420, 931, 1248
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	2 cut(s)	564, 663
TasI	AATT	5 cut(s)	91, 442, 716, 861, 1011
TauI	GCSGC	5 cut(s)	17, 56, 59, 71, 74
TfiI	GAWTC	3 cut(s)	20, 331, 1099
Tru1I	TTAA	4 cut(s)	375, 390, 1014, 1236
Tru9I	TTAA	4 cut(s)	375, 390, 1014, 1236
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	3 cut(s)	59, 74, 910
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	1218
TspRI	CASTG	1 cut(s)	358
Tth111I	GACNNNGTC	1 cut(s)	878
VpaK11BI	GGWCC	2 cut(s)	530, 923
XapI	RAATTY	1 cut(s)	716
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	3 cut(s)	555, 619, 1132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmiI	GTMKAC	2 cut(s)	432, 620
XspI	CTAG	4 cut(s)	479, 641, 804, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.