Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00122

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Forward (+)

12972 .. 15901

Gene Structure 2930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTATTCTTTTTGTTTTACTTTTTTGCTCTGGCTTGTATAAAGTTGCTGAGAATGTGTTCATGGTATTCAACGCGGAAACATTCCAAGAGAAAGACTCAGCAGTCTCTACACACTCACTGCGCCCATGACAAGAACAGGTTCTACAAACAACTAGGATTATTTTCATTGAAAAAGAAGATTGAAGATGCTGTTTTCCGAGCTGAGATGTTGGCCCCATTGGCACTGGAGCTTGAAGAAGAAAGACGGAATGAGCAAGAACAACTGATACACGACTATGACCTCTGGGATGACACTACTGAGTCCAATGAGGTTCTTGCCAAATTGGCTGATAGTGTTAGAGTGGTTGATGCTCTCAGAGACTTGACATATAAGGCTGAAGAAGCAAAACTTATTACACAGTTAGTAGAGATATATGCTATCAATTATGGGCTTTTTAGGAAGGCATGTGATGCATCTCTGGATATGAGCAAGATTTTGAATAAATATGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGAGCATGTCTAATTATAAAAGCTGGTGGCACAGGCTACCCTGAGGTTTCTGTAAAACAACAACTAAGCATGTATACCAAATGGGCCAGAAAGCTAGGTTACAAAGGAAGGGTAGTAGAGATGCATTCTTCCACGAATGGTGGCATCAAGTCAGCAACTATTGAGTTTGCTTTTGGTTATCTATCAGGAGAGGCAGGTGTGCACTACATCATAAATTCTAAAAACGGATCTGCTATGCATGATGATATCAATCCAATATTAAACTGCTTGGACTTGTTTCTTGGTTTTGTGGATTGCGAAGACTTGGTTTTGTCTCTCCCCTATTTTGGTGTTAATCATGCATGCTTCTGTTCATATAATAAAAACTGTCGTCTGAGATTAATACAGATCCCGGATGCTATCAATGTTTTAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

315

Amino Acids

35.97

Weight (kDa)

7.54

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	81 - 245	4.7e-16	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AarI	CACCTGC	1 cut(s)	713
AasI	GACNNNNNNGTC	1 cut(s)	103
Acc36I	ACCTGC	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	602
AccII	CGCG	1 cut(s)	76
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	2 cut(s)	763, 910
AcsI	RAATTY	1 cut(s)	742
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	854
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	72, 172, 185, 236, 481
AluBI	AGCT	5 cut(s)	203, 232, 502, 551, 622
AluI	AGCT	5 cut(s)	203, 232, 502, 551, 622
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	3 cut(s)	111, 354, 846
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	2 cut(s)	763, 910
AoxI	GGCC	2 cut(s)	213, 612
ApaLI	GTGCAC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	742
AseI	ATTAAT	1 cut(s)	908
Asp700I	GAANNNNTTC	2 cut(s)	58, 140
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	214, 512, 612
AsuC2I	CCSGG	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	512
AxyI	CCTNAGG	1 cut(s)	570
BaeGI	GKGCMC	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	834
Bbv12I	GWGCWC	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	3 cut(s)	111, 354, 846
BfaI	CTAG	2 cut(s)	155, 623
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	713
BglI	GCCNNNNNGGC	2 cut(s)	221, 326
Bme1390I	CCNGG	1 cut(s)	920
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	214, 512, 612
BmiI	GGNNCC	2 cut(s)	216, 513
BmrFI	CCNGG	1 cut(s)	920
BmsI	GCATC	7 cut(s)	178, 340, 442, 464, 639, 681, 913
BpiI	GAAGAC	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	920
BsaBI	GATNNNNATC	1 cut(s)	777
Bsc4I	CCNNNNNNNGG	1 cut(s)	854
Bse1I	ACTGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	777
BseGI	GGATG	2 cut(s)	295, 928
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	1 cut(s)	854
BseMII	CTCAG	7 cut(s)	41, 113, 195, 291, 370, 561, 893
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	215, 614
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	854
BsmAI	GTCTC	3 cut(s)	111, 354, 846
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	2 cut(s)	215, 614
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	755, 915
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	215, 614
BspCNI	CTCAG	7 cut(s)	42, 112, 196, 292, 369, 562, 894
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	216, 513
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	2 cut(s)	763, 910
BspTI	CTTAAG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	755, 915
BssNAI	GTATAC	1 cut(s)	603
Bst1107I	GTATAC	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	402, 896
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	8 cut(s)	50, 99, 204, 300, 356, 570, 593, 902
BstF5I	GGATG	2 cut(s)	295, 928
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	758, 918
BstMAI	GTCTC	3 cut(s)	111, 354, 846
BstMBI	GATC	2 cut(s)	755, 915
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 326, 383, 452
BstNSI	RCATGY	4 cut(s)	450, 537, 601, 873
BstSCI	CCNGG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	732
BstUI	CGCG	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	834
BstX2I	RGATCY	2 cut(s)	755, 915
BstYI	RGATCY	2 cut(s)	755, 915
BstZ17I	GTATAC	1 cut(s)	603
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	2 cut(s)	215, 614
BtsCI	GGATG	2 cut(s)	295, 928
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	118, 224
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	871
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	214, 512, 612
CviAII	CATG	9 cut(s)	63, 128, 447, 523, 534, 598, 767, 866, 870
DdeI	CTNAG	8 cut(s)	50, 99, 204, 300, 356, 570, 593, 902
DpnI	GATC	2 cut(s)	757, 917
DpnII	GATC	2 cut(s)	755, 915
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	399
Eco81I	CCTNAGG	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	775
EcoT22I	ATGCAT	4 cut(s)	457, 654, 768, 871
FaeI	CATG	9 cut(s)	66, 131, 450, 526, 537, 601, 770, 869, 873
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	9 cut(s)	62, 127, 446, 522, 533, 597, 766, 865, 869
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	602
FokI	GGATG	2 cut(s)	302, 935
FspBI	CTAG	2 cut(s)	155, 623
GlaI	GCGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	215, 614
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	9 cut(s)	66, 131, 450, 526, 537, 601, 770, 869, 873
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	2 cut(s)	97, 302
HpaII	CCGG	1 cut(s)	920
Hpy166II	GTNNAC	2 cut(s)	603, 730
Hpy188I	TCNGA	3 cut(s)	200, 359, 903
Hpy188III	TCNNGA	2 cut(s)	461, 714
Hpy8I	GTNNAC	2 cut(s)	603, 730
HpyAV	CCTTC	2 cut(s)	436, 630
HpyCH4III	ACNGT	2 cut(s)	402, 896
HpyCH4V	TGCA	5 cut(s)	455, 652, 730, 766, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 326, 383, 452
HpyF3I	CTNAG	8 cut(s)	50, 99, 204, 300, 356, 570, 593, 902
Hsp92II	CATG	9 cut(s)	66, 131, 450, 526, 537, 601, 770, 869, 873
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	755, 915
LmnI	GCTCC	2 cut(s)	229, 530
LweI	GCATC	7 cut(s)	178, 340, 442, 464, 639, 681, 913
MaeI	CTAG	2 cut(s)	155, 623
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	2 cut(s)	757, 917
MboI	GATC	2 cut(s)	755, 915
MboII	GAAGA	7 cut(s)	190, 197, 248, 251, 392, 648, 839
MflI	RGATCY	2 cut(s)	755, 915
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	4 cut(s)	323, 424, 540, 742
MlyI	GAGTC	2 cut(s)	91, 311
MnlI	CCTC	5 cut(s)	293, 304, 520, 565, 712
Mph1103I	ATGCAT	4 cut(s)	457, 654, 768, 871
MroXI	GAANNNNTTC	2 cut(s)	58, 140
MseI	TTAA	4 cut(s)	507, 788, 861, 908
MslI	CAYNNNNRTG	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	1 cut(s)	920
Mva1269I	GAATGC	1 cut(s)	652
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	4 cut(s)	221, 326, 383, 452
NciI	CCSGG	1 cut(s)	920
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	2 cut(s)	755, 915
NlaIII	CATG	9 cut(s)	66, 131, 450, 526, 537, 601, 770, 869, 873
NlaIV	GGNNCC	2 cut(s)	216, 513
NsiI	ATGCAT	4 cut(s)	457, 654, 768, 871
NspI	RCATGY	4 cut(s)	450, 537, 601, 873
PaeI	GCATGC	1 cut(s)	873
PaqCI	CACCTGC	1 cut(s)	713
PctI	GAATGC	1 cut(s)	652
PdmI	GAANNNNTTC	2 cut(s)	58, 140
PfoI	TCCNGGA	1 cut(s)	918
PleI	GAGTC	2 cut(s)	91, 310
PpsI	GAGTC	2 cut(s)	91, 310
PshBI	ATTAAT	1 cut(s)	908
PsiI	TTATAA	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	216, 513
PspPI	GGNCC	3 cut(s)	214, 512, 612
PsrI	GAACNNNNNNTAC	4 cut(s)	128, 160, 252, 284
PsuI	RGATCY	2 cut(s)	755, 915
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	507, 788, 861, 908
Sau3AI	GATC	2 cut(s)	755, 915
Sau96I	GGNCC	3 cut(s)	214, 512, 612
SchI	GAGTC	2 cut(s)	91, 311
ScrFI	CCNGG	1 cut(s)	920
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	7 cut(s)	178, 340, 442, 464, 639, 681, 913
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	1 cut(s)	873
Sse9I	AATT	4 cut(s)	323, 424, 540, 742
SsiI	CCGC	1 cut(s)	76
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	2 cut(s)	155, 623
StyD4I	CCNGG	1 cut(s)	918
TaaI	ACNGT	2 cut(s)	402, 896
TasI	AATT	4 cut(s)	323, 424, 540, 742
Tru1I	TTAA	4 cut(s)	507, 788, 861, 908
Tru9I	TTAA	4 cut(s)	507, 788, 861, 908
TscAI	CASTG	2 cut(s)	125, 231
TspDTI	ATGAA	3 cut(s)	51, 156, 870
TspGWI	ACGGA	2 cut(s)	262, 768
TspRI	CASTG	2 cut(s)	125, 231
Vha464I	CTTAAG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	512
VspI	ATTAAT	1 cut(s)	908
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	4 cut(s)	450, 537, 601, 873
XmiI	GTMKAC	1 cut(s)	602
XmnI	GAANNNNTTC	2 cut(s)	58, 140
XspI	CTAG	2 cut(s)	155, 623
Zsp2I	ATGCAT	4 cut(s)	457, 654, 768, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.