Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Forward (+)

30462675 .. 30467315

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G012980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCCGCCGAGTCCGCATTTGTCAGAAATGGCGGGAGCAGCAGCACCAGCGCCACCACTGCTGCCTTATTCAGCAGCTCAGCGTGGAAACATTCCAAGAGAAAGACCCAGCAGTCTCTACACACTCACTGCGCCCATGACAAGAACAGGTTCTACAAACAACTGGGATTATTTTCATTGAAAAAGAAGATTGAAGATGCAGTTCTCCGAGCTGAGATGTTGGCCCCATTGGCACTGGAGCTTGAAGAAGAGAGACGGAATGAGCAGGAACAACTGATGCGTGACTATGACCTATGGGATGACACTGCTGAGTCCAATGAGGTTCTTGCTAAATTGGCTGATAGTGTTAGAGTGGTTGACGCTCTCAGAGACTTGACATATAAGGCTGAAGAAGCAAAACTTATTACACAGTTAGCAGAGATAGATGCTATCAATTATGGGCTTTTTAGGCAAGCATATGATGCATCTCTGGATATGAGCAAGATTTTGAATAAATATGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGAGCATGTCTAATTATAAAAGCTGGTGGCACAGGCTACCCTGAGGTTTGGGTAAAACAACTACTAAGCATGTATACCAAATGGGCCAGAAAGCTAGGTTACAAAGGGAGGGTAGTAGAGATGCATTCTTCCACGAATGGTGGCATCAAGTCAGCAACTATTGAGTTTGAACATGAGTTTGCTTTTGGTTATCTATCAGGAGAGGCAGGTGTGCACTACATCATAAATTCTGAAAACGGATCTGCTGTGCACAAGGCGGCTAGCTCAGCTAGTGTGGATGTTGTTCCTCTATTTCTTGGACGAGCTTATGACATACAAATTGACGAGGAAGATTTAGTTATTGTATTGCCATCAAAGCTTGAAGAAAAGCAGAGCCAAAATGGTCCTTTAGTTTACATTCACCATAAACCCACAGGCATAAGTGTCCAATCGTCAGGTGAGAGGAGCCACTTTGCAAATAAGATGAAAGCCATGAACCGATTGAAAGCCAAGCTTCTCATCCTTGCATTGGAACAAGGAGTTAACAAGCCTAGTGATATTAAGAAAGATGAGATTGTCAATGTATGGCAAAAGGAGACTCGAAGATACATGTCTCATCCACATAAATTAGTCAAGGATTTAAAAACGGGTATCCAACTACCTGACCTTATGTCTGTTTTGGGTGGAAATCTTGAACCTCTTATTGCTGCTCATATTAATATAAGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

415

Amino Acids

46.42

Weight (kDa)

7.76

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	84 - 253	3e-23	PCRF domain
RF-1	PF00472	310 - 386	3.2e-11	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AarI	CACCTGC	1 cut(s)	734
AasI	GACNNNNNNGTC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	611
AciI	CCGC	4 cut(s)	6, 15, 33, 794
AclWI	GGATC	1 cut(s)	784
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	1045
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	1125
AgsI	TTSAA	8 cut(s)	181, 194, 245, 490, 707, 899, 1021, 1211
AhdI	GACNNNNNGTC	1 cut(s)	1186
Alw21I	GWGCWC	2 cut(s)	753, 789
Alw26I	GTCTC	5 cut(s)	120, 247, 363, 1106, 1134
Alw44I	GTGCAC	2 cut(s)	749, 785
AlwI	GGATC	1 cut(s)	784
AoxI	GGCC	3 cut(s)	3, 222, 621
ApaLI	GTGCAC	2 cut(s)	749, 785
ApeKI	GCWGC	5 cut(s)	39, 42, 62, 75, 1223
ApoI	RAATTY	1 cut(s)	763
AseI	ATTAAT	1 cut(s)	1233
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	53, 134
AspS9I	GGNCC	4 cut(s)	223, 521, 621, 920
AsuHPI	GGTGA	2 cut(s)	929, 986
AsuNHI	GCTAGC	1 cut(s)	797
AvaII	GGWCC	2 cut(s)	521, 920
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	2 cut(s)	753, 789
Bbv12I	GWGCWC	2 cut(s)	753, 789
BbvI	GCAGC	5 cut(s)	49, 51, 54, 87, 1210
BccI	CCATC	1 cut(s)	895
BciVI	GTATCC	1 cut(s)	1178
BcoDI	GTCTC	5 cut(s)	120, 247, 363, 1106, 1134
BfaI	CTAG	4 cut(s)	632, 798, 807, 1068
BfoI	RGCGCY	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	734
BfuI	GTATCC	1 cut(s)	1178
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	7 cut(s)	6, 40, 43, 63, 76, 795, 1224
BlpI	GCTNAGC	2 cut(s)	79, 802
BlsI	GCNGC	7 cut(s)	7, 41, 44, 64, 77, 796, 1225
Bme18I	GGWCC	2 cut(s)	521, 920
BmeRI	GACNNNNNGTC	1 cut(s)	1186
BmgT120I	GGNCC	4 cut(s)	223, 521, 621, 920
BmiI	GGNNCC	3 cut(s)	225, 522, 983
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	7 cut(s)	187, 267, 415, 451, 473, 648, 690
BmtI	GCTAGC	1 cut(s)	801
BmuI	ACTGGG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	257
Bpu1102I	GCTNAGC	2 cut(s)	79, 802
Bsc4I	CCNNNNNNNGG	1 cut(s)	1045
Bse1I	ACTGG	2 cut(s)	168, 240
Bse21I	CCTNAGG	1 cut(s)	579
BseGI	GGATG	4 cut(s)	304, 820, 1035, 1132
BseLI	CCNNNNNNNGG	1 cut(s)	1045
BseMII	CTCAG	6 cut(s)	93, 204, 300, 379, 570, 816
BseNI	ACTGG	2 cut(s)	168, 240
BseRI	GAGGAG	1 cut(s)	994
BseSI	GKGCMC	2 cut(s)	753, 789
BseXI	GCAGC	5 cut(s)	49, 51, 54, 87, 1210
BseYI	CCCAGC	1 cut(s)	108
BshFI	GGCC	3 cut(s)	5, 224, 623
BsiHKAI	GWGCWC	2 cut(s)	753, 789
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	1045
BsmAI	GTCTC	5 cut(s)	120, 247, 363, 1106, 1134
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	3 cut(s)	5, 224, 623
Bsp1286I	GDGCHC	2 cut(s)	753, 789
Bsp143I	GATC	1 cut(s)	776
Bsp1720I	GCTNAGC	2 cut(s)	79, 802
BspACI	CCGC	4 cut(s)	6, 15, 33, 794
BspANI	GGCC	3 cut(s)	5, 224, 623
BspCNI	CTCAG	6 cut(s)	92, 205, 301, 378, 571, 815
BspLI	GGNNCC	3 cut(s)	225, 522, 983
BspMI	ACCTGC	1 cut(s)	734
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	1 cut(s)	784
BspTI	CTTAAG	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	168, 240
BssMI	GATC	1 cut(s)	776
BssNAI	GTATAC	1 cut(s)	612
Bst1107I	GTATAC	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	411, 1245
Bst6I	CTCTTC	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	453, 799
BstDEI	CTNAG	7 cut(s)	79, 213, 309, 365, 579, 602, 802
BstF5I	GGATG	4 cut(s)	304, 820, 1035, 1132
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 134
BstKTI	GATC	1 cut(s)	779
BstMAI	GTCTC	5 cut(s)	120, 247, 363, 1106, 1134
BstMBI	GATC	1 cut(s)	776
BstNSI	RCATGY	3 cut(s)	546, 610, 1129
BstSLI	GKGCMC	2 cut(s)	753, 789
BstV1I	GCAGC	5 cut(s)	49, 51, 54, 87, 1210
BstX2I	RGATCY	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	776
BstZ17I	GTATAC	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	1178
BsuRI	GGCC	3 cut(s)	5, 224, 623
BtsCI	GGATG	4 cut(s)	304, 820, 1035, 1132
BtsI	GCAGTG	3 cut(s)	57, 127, 303
BtsIMutI	CAGTG	4 cut(s)	57, 127, 233, 303
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	2 cut(s)	453, 799
CfoI	GCGC	2 cut(s)	53, 134
Cfr13I	GGNCC	4 cut(s)	223, 521, 621, 920
CseI	GACGC	1 cut(s)	368
CviAII	CATG	7 cut(s)	137, 532, 543, 607, 710, 1009, 1126
DdeI	CTNAG	7 cut(s)	79, 213, 309, 365, 579, 602, 802
DpnI	GATC	1 cut(s)	778
DpnII	GATC	1 cut(s)	776
DraI	TTTAAA	1 cut(s)	1158
DrdI	GACNNNNNNGTC	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	1186
DseDI	GACNNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	243
Eam1105I	GACNNNNNGTC	1 cut(s)	1186
EarI	CTCTTC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	521, 920
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	579
EcoT22I	ATGCAT	2 cut(s)	466, 663
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	7 cut(s)	140, 535, 546, 610, 713, 1012, 1129
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 1014, 1046
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	7 cut(s)	136, 531, 542, 606, 709, 1008, 1125
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	2 cut(s)	457, 526
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	7 cut(s)	6, 40, 43, 63, 76, 795, 1224
FokI	GGATG	4 cut(s)	311, 827, 1022, 1119
Fsp4HI	GCNGC	7 cut(s)	6, 40, 43, 63, 76, 795, 1224
FspBI	CTAG	4 cut(s)	632, 798, 807, 1068
GlaI	GCGC	2 cut(s)	52, 133
GluI	GCNGC	7 cut(s)	6, 40, 43, 63, 76, 795, 1224
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	5, 224, 623
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	53, 134
Hin1II	CATG	7 cut(s)	140, 535, 546, 610, 713, 1012, 1129
Hin6I	GCGC	2 cut(s)	51, 132
HinP1I	GCGC	2 cut(s)	51, 132
HincII	GTYRAC	2 cut(s)	358, 1060
HindII	GTYRAC	2 cut(s)	358, 1060
HindIII	AAGCTT	3 cut(s)	509, 893, 1028
HinfI	GANTC	3 cut(s)	11, 311, 1114
HpaI	GTTAAC	1 cut(s)	1060
HphI	GGTGA	2 cut(s)	929, 986
Hpy166II	GTNNAC	6 cut(s)	358, 612, 751, 787, 931, 1060
Hpy188I	TCNGA	4 cut(s)	26, 209, 368, 769
Hpy188III	TCNNGA	3 cut(s)	470, 735, 1208
Hpy8I	GTNNAC	6 cut(s)	358, 612, 751, 787, 931, 1060
HpyCH4III	ACNGT	2 cut(s)	411, 1245
HpyCH4V	TGCA	7 cut(s)	200, 464, 661, 751, 787, 992, 1043
HpyF3I	CTNAG	7 cut(s)	79, 213, 309, 365, 579, 602, 802
Hsp92II	CATG	7 cut(s)	140, 535, 546, 610, 713, 1012, 1129
HspAI	GCGC	2 cut(s)	51, 132
KspAI	GTTAAC	1 cut(s)	1060
Kzo9I	GATC	1 cut(s)	776
LmnI	GCTCC	4 cut(s)	36, 238, 539, 981
Lsp1109I	GCAGC	5 cut(s)	49, 51, 54, 87, 1210
LweI	GCATC	7 cut(s)	187, 267, 415, 451, 473, 648, 690
MaeI	CTAG	4 cut(s)	632, 798, 807, 1068
MaeIII	GTNAC	2 cut(s)	281, 635
MalI	GATC	1 cut(s)	778
MboI	GATC	1 cut(s)	776
MboII	GAAGA	9 cut(s)	199, 206, 257, 260, 401, 657, 878, 911, 1131
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	2 cut(s)	753, 789
MluCI	AATT	6 cut(s)	332, 433, 549, 763, 855, 1142
MlyI	GAGTC	3 cut(s)	20, 320, 1108
MmeI	TCCRAC	1 cut(s)	1195
MnlI	CCTC	9 cut(s)	313, 529, 574, 639, 733, 834, 856, 972, 1224
Mph1103I	ATGCAT	2 cut(s)	466, 663
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	5 cut(s)	516, 1059, 1077, 1157, 1233
MspCI	CTTAAG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	661
NdeI	CATATG	2 cut(s)	457, 526
NdeII	GATC	1 cut(s)	776
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	7 cut(s)	140, 535, 546, 610, 713, 1012, 1129
NlaIV	GGNNCC	3 cut(s)	225, 522, 983
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	2 cut(s)	466, 663
NspI	RCATGY	3 cut(s)	546, 610, 1129
PaqCI	CACCTGC	1 cut(s)	734
PciI	ACATGT	1 cut(s)	1125
PctI	GAATGC	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	7 cut(s)	7, 41, 44, 64, 77, 796, 1225
PleI	GAGTC	3 cut(s)	19, 319, 1108
PpsI	GAGTC	3 cut(s)	19, 319, 1108
PscI	ACATGT	1 cut(s)	1125
PshBI	ATTAAT	1 cut(s)	1233
PsiI	TTATAA	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	225, 522, 983
PspPI	GGNCC	4 cut(s)	223, 521, 621, 920
PsrI	GAACNNNNNNTAC	2 cut(s)	137, 169
PsuI	RGATCY	1 cut(s)	776
SaqAI	TTAA	5 cut(s)	516, 1059, 1077, 1157, 1233
SatI	GCNGC	7 cut(s)	6, 40, 43, 63, 76, 795, 1224
Sau3AI	GATC	1 cut(s)	776
Sau96I	GGNCC	4 cut(s)	223, 521, 621, 920
SchI	GAGTC	3 cut(s)	20, 320, 1108
SduI	GDGCHC	2 cut(s)	753, 789
SfaNI	GCATC	7 cut(s)	187, 267, 415, 451, 473, 648, 690
SinI	GGWCC	2 cut(s)	521, 920
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	6 cut(s)	332, 433, 549, 763, 855, 1142
SsiI	CCGC	4 cut(s)	6, 15, 33, 794
SspMI	CTAG	4 cut(s)	632, 798, 807, 1068
TaaI	ACNGT	2 cut(s)	411, 1245
TaqI	TCGA	1 cut(s)	1117
TasI	AATT	6 cut(s)	332, 433, 549, 763, 855, 1142
TauI	GCSGC	2 cut(s)	8, 797
Tru1I	TTAA	5 cut(s)	516, 1059, 1077, 1157, 1233
Tru9I	TTAA	5 cut(s)	516, 1059, 1077, 1157, 1233
TscAI	CASTG	4 cut(s)	64, 134, 240, 310
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	5 cut(s)	39, 42, 62, 75, 1223
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	165, 1016, 1025
TspGWI	ACGGA	2 cut(s)	271, 789
TspRI	CASTG	4 cut(s)	64, 134, 240, 310
Vha464I	CTTAAG	1 cut(s)	515
VneI	GTGCAC	2 cut(s)	749, 785
VpaK11BI	GGWCC	2 cut(s)	521, 920
VspI	ATTAAT	1 cut(s)	1233
XapI	RAATTY	1 cut(s)	763
XceI	RCATGY	3 cut(s)	546, 610, 1129
XmiI	GTMKAC	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	4 cut(s)	632, 798, 807, 1068
Zsp2I	ATGCAT	2 cut(s)	466, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.