Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015338.1

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

14356 .. 17594

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015338.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgacaaccttcgaatttcgccaatctcacactccagccgagaaaggtttcaaagctgtcacttttgacatgagaggagttgggaggtcaactgggaaggtttctcttactgggtttgtagaaatcaaggatgtgatttctggctacaaattggtctctaagaatttgtctgctaatagaattttgcttgtgggttcttctgcaggtgtgaagattgaagattctgttctccgagctgagatgttggccccattggcactggagcttgaagaagaaagacggaatgagcaagaacaactgatactcgactatgacctctgggatgacactgctgagtccaatgaggttcttgctaaattggctgatagtgttagagtggttgatgctctaagagacttgacatataaagaagctgtcaagggacaattatggcgcctacgtgatccccaagggaagccaccaggtgtaatgggatggtggccttcaagagctgtgatcaacatttttaaaatggtagacttagcagcaggaaaagatggcattgccaaggttgggggccagagtgtatacatacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

192

Amino Acids

21.27

Weight (kDa)

5.96

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	432
AccI	GTMKAC	2 cut(s)	516, 567
AclWI	GGATC	1 cut(s)	437
AcsI	RAATTY	3 cut(s)	14, 163, 180
AcyI	GRCGYC	1 cut(s)	433
AdeI	CACNNNGTG	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	4 cut(s)	52, 218, 269, 486
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	5 cut(s)	56, 236, 265, 413, 491
AluI	AGCT	5 cut(s)	56, 236, 265, 413, 491
Alw26I	GTCTC	2 cut(s)	160, 387
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	3 cut(s)	246, 479, 556
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	3 cut(s)	14, 163, 180
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	247, 556
AsuII	TTCGAA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	2 cut(s)	468, 530
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	2 cut(s)	160, 387
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	462
BmgT120I	GGNCC	2 cut(s)	247, 556
BmiI	GGNNCC	3 cut(s)	249, 434, 557
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	2 cut(s)	102, 120
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	2 cut(s)	102, 120
BpmI	CTGGAG	2 cut(s)	18, 281
Bpu14I	TTCGAA	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	448, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse1I	ACTGG	3 cut(s)	97, 115, 264
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	448, 546
BseGI	GGATG	3 cut(s)	136, 328, 479
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	2 cut(s)	228, 324
BseNI	ACTGG	3 cut(s)	97, 115, 264
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	536
BshFI	GGCC	3 cut(s)	248, 481, 558
BshNI	GGYRCC	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	2 cut(s)	160, 387
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	248, 481, 558
Bso31I	GGTCTC	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	442, 495
BspANI	GGCC	3 cut(s)	248, 481, 558
BspCNI	CTCAG	2 cut(s)	229, 325
BspLI	GGNNCC	3 cut(s)	249, 434, 557
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	540
BsrI	ACTGG	3 cut(s)	97, 115, 264
BssECI	CCNNGG	2 cut(s)	448, 546
BssMI	GATC	2 cut(s)	442, 495
BssNAI	GTATAC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	433
BssT1I	CCWWGG	2 cut(s)	448, 546
Bst1107I	GTATAC	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	433
BstBAI	YACGTR	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	12
BstDEI	CTNAG	5 cut(s)	159, 237, 333, 389, 520
BstF5I	GGATG	3 cut(s)	136, 328, 479
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	445, 498
BstMAI	GTCTC	2 cut(s)	160, 387
BstMBI	GATC	2 cut(s)	442, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 359
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	536
BstZ17I	GTATAC	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	248, 481, 558
BtsCI	GGATG	3 cut(s)	136, 328, 479
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	257, 327
BveI	ACCTGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	247, 556
CsiI	ACCWGGT	1 cut(s)	460
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	5 cut(s)	159, 237, 333, 389, 520
DinI	GGCGCC	1 cut(s)	434
DpnI	GATC	2 cut(s)	444, 497
DpnII	GATC	2 cut(s)	442, 495
DraI	TTTAAA	1 cut(s)	508
DraIII	CACNNNGTG	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	448, 546
Eco31I	GGTCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	448, 546
EgeI	GGCGCC	1 cut(s)	434
EheI	GGCGCC	1 cut(s)	434
ErhI	CCWWGG	2 cut(s)	448, 546
FaeI	CATG	1 cut(s)	73
FaiI	YATR	7 cut(s)	71, 312, 403, 405, 430, 568, 572
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	2 cut(s)	516, 567
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	3 cut(s)	143, 335, 486
Fsp4HI	GCNGC	1 cut(s)	525
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	2 cut(s)	18, 281
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	3 cut(s)	248, 481, 558
HhaI	GCGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	221, 335
Hpy166II	GTNNAC	3 cut(s)	90, 517, 568
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	486
Hpy8I	GTNNAC	3 cut(s)	90, 517, 568
HpyAV	CCTTC	3 cut(s)	19, 91, 492
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 359
HpyF3I	CTNAG	5 cut(s)	159, 237, 333, 389, 520
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	433
KasI	GGCGCC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	442, 495
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	460
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	444, 497
MboI	GATC	2 cut(s)	442, 495
MboII	GAAGA	5 cut(s)	189, 223, 230, 281, 284
MluCI	AATT	6 cut(s)	14, 149, 163, 180, 356, 425
Mly113I	GGCGCC	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	4 cut(s)	68, 78, 326, 337
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	254, 359
NarI	GGCGCC	1 cut(s)	433
NdeII	GATC	2 cut(s)	442, 495
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	3 cut(s)	249, 434, 557
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	1 cut(s)	343
PluTI	GGCGCC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	249, 434, 557
PspPI	GGNCC	2 cut(s)	247, 556
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PstI	CTGCAG	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	2 cut(s)	442, 495
Sau96I	GGNCC	2 cut(s)	247, 556
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	462
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	12
Sse9I	AATT	6 cut(s)	14, 149, 163, 180, 356, 425
SspDI	GGCGCC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	448, 546
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	12, 306
TasI	AATT	6 cut(s)	14, 149, 163, 180, 356, 425
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	2 cut(s)	264, 334
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	264, 334
XapI	RAATTY	3 cut(s)	14, 163, 180
XmiI	GTMKAC	2 cut(s)	516, 567
XmnI	GAANNNNTTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.