Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

40705708 .. 40707126

Gene Structure 1419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32320

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGACCTCTGGGATGACACTACTGAGTCCAATGAGGTTCGATCTTGCCAAATTGGCTGATAGTGTTAGAGTGGTTGATGCTCTCAGAGACTTGACATATAAGGCTGAAGAAGCAAAACTTATTACACAGTTAGCAGAGATAGATGCTATCAATTATAGGCTTTTTAGGAAAGCATATGATGCATCTCTGGATATGAGCAAGACTTTGAATAAATATGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGAGCATGTCTAATTATAAAAGCTGGTGGCACAGGCTACCTTGAGGTTTCGGTAAAACAACAACTAAGCATGTATACCAAATGGGCTAGAAAGCTAGGTTACAAAGGAAGGGTAGTAGAGATGCATTCTTCCACAAATGGTGGCATCAAGTCAGCAACTATTGAGTTTGAACATGAGTTTGCTTTTGGTTATCTATCAGGAGAGGCAGGTGCGCACCACATCATAAATTCTAAAAACGGATCTGCTGTGCACGAGGTACAACTCTGTCTTGTTGATATCAATCCAATATTAAAGTTCAGAACTGTCGTATTTTCTTTTCCTAAAAAAAGAAGTCACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

198

Amino Acids

22.2

Weight (kDa)

9.21

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	16 - 159	1.1e-16	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AarI	CACCTGC	1 cut(s)	452
Acc16I	TGCGCA	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	513
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	208, 425
AluBI	AGCT	3 cut(s)	229, 278, 349
AluI	AGCT	3 cut(s)	229, 278, 349
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	502
ApaLI	GTGCAC	1 cut(s)	503
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	507
BauI	CACGAG	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	2 cut(s)	342, 350
BfrI	CTTAAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	452
BglI	GCCNNNNNGGC	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	6 cut(s)	67, 133, 169, 191, 366, 408
BpuEI	CTTGAG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	596
Bse8I	GATNNNNATC	1 cut(s)	534
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	14, 97
BseNI	ACTGG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	40, 494
BspCNI	CTCAG	2 cut(s)	15, 96
BspLI	GGNNCC	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	502
BspTI	CTTAAG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	596
BssMI	GATC	2 cut(s)	40, 494
BssNAI	GTATAC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	506
Bst1107I	GTATAC	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	129, 559
BstAFI	CTTAAG	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	23, 83, 320
BstF5I	GGATG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	2 cut(s)	43, 497
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	40, 494
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 110, 179
BstNSI	RCATGY	2 cut(s)	264, 328
BstSLI	GKGCMC	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BstZ17I	GTATAC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	589
BveI	ACCTGC	1 cut(s)	452
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	4 cut(s)	250, 261, 325, 428
CviJI	RGCY	8 cut(s)	56, 104, 160, 229, 278, 291, 341, 349
CviKI_1	RGCY	8 cut(s)	56, 104, 160, 229, 278, 291, 341, 349
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	3 cut(s)	23, 83, 320
DpnI	GATC	2 cut(s)	42, 496
DpnII	GATC	2 cut(s)	40, 494
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	532
EcoT22I	ATGCAT	2 cut(s)	184, 381
FaeI	CATG	4 cut(s)	253, 264, 328, 431
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	4 cut(s)	249, 260, 324, 427
FauNDI	CATATG	2 cut(s)	175, 244
FblI	GTMKAC	1 cut(s)	329
FokI	GGATG	1 cut(s)	25
FspAI	RTGCGCAY	1 cut(s)	468
FspBI	CTAG	2 cut(s)	342, 350
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	253, 264, 328, 431
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	330, 505
Hpy188I	TCNGA	2 cut(s)	86, 554
Hpy188III	TCNNGA	2 cut(s)	188, 453
Hpy8I	GTNNAC	2 cut(s)	330, 505
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	2 cut(s)	129, 559
HpyCH4V	TGCA	3 cut(s)	182, 379, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 110, 179
HpyF3I	CTNAG	3 cut(s)	23, 83, 320
Hsp92II	CATG	4 cut(s)	253, 264, 328, 431
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	40, 494
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	6 cut(s)	173, 264, 273, 438, 447, 577
LweI	GCATC	6 cut(s)	67, 133, 169, 191, 366, 408
MaeI	CTAG	2 cut(s)	342, 350
MaeIII	GTNAC	2 cut(s)	353, 587
MalI	GATC	2 cut(s)	42, 496
MboI	GATC	2 cut(s)	40, 494
MboII	GAAGA	2 cut(s)	119, 375
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	50, 151, 267, 481
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	6 cut(s)	16, 27, 247, 292, 451, 502
Mph1103I	ATGCAT	2 cut(s)	184, 381
MseI	TTAA	2 cut(s)	234, 545
MspCI	CTTAAG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	53, 110, 179
NdeI	CATATG	2 cut(s)	175, 244
NdeII	GATC	2 cut(s)	40, 494
NlaIII	CATG	4 cut(s)	253, 264, 328, 431
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	587
NsbI	TGCGCA	1 cut(s)	468
NsiI	ATGCAT	2 cut(s)	184, 381
NspI	RCATGY	2 cut(s)	264, 328
PaqCI	CACCTGC	1 cut(s)	452
PctI	GAATGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SaqAI	TTAA	2 cut(s)	234, 545
Sau3AI	GATC	2 cut(s)	40, 494
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	6 cut(s)	67, 133, 169, 191, 366, 408
SinI	GGWCC	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	233, 296
SmoI	CTYRAG	2 cut(s)	233, 296
Sse9I	AATT	4 cut(s)	50, 151, 267, 481
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	2 cut(s)	342, 350
TaaI	ACNGT	2 cut(s)	129, 559
TaqI	TCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	50, 151, 267, 481
Tru1I	TTAA	2 cut(s)	234, 545
Tru9I	TTAA	2 cut(s)	234, 545
TscAI	CASTG	1 cut(s)	596
TseFI	GTSAC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	587
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	596
Vha464I	CTTAAG	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	2 cut(s)	264, 328
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	2 cut(s)	342, 350
Zsp2I	ATGCAT	2 cut(s)	184, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.