Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

25484288 .. 25487111

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG221000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACAACCTCCGAATCTCACACTCCAGCCGAGAAAGAATTTTGCTTGTGGGTTCTTCTGCAGTTGCTGAGAAGGTGTTCATGGTATTCAATGCGGAAACATTCCAAGAGAAAGACCCAGCAGTCTCTACACACTCACTGCGCCCATGACATGAACAGGTTCTACAAACAACTGGGATTATTTTCATTGAAAAAGAAGATTGAAGATGCTGTTCTCCAAGCTGAGATGTTGGCCCCATTGGCACTGGAGCTTGAAGAAGAAAGACGGAATGAGCAAGAACAAATGATACGTGACTATGACCTCTGGGATGACACTGCTGAGTCCAATCAGGTTCTTGCCAAATTAGCTGATAGTGTTAGAGTGGTTGATGCTCTCAGAGACTTGACATATAAGGTTTCGGTAAAACGACGACTAAGCATGTATACCAAATGGGCCAGAAAGCTAGGTTACAAAGGAAGGGTAGTAGAGATGCATTCTTCCACGAATGGTGGCATCAATCGTGGTCCATTTAAAAGCATGTTGTGCAAAAATCTAGAACTTAGACCAAGTGAAGCTGTCAAGGGACAATTATGGAGTCTACGTGATCCCCAAGGGAAGCCACCGGGTGTAATGGGATGGTGGCCTTCAAGAGCTGTGATCAACATTTTTAAAATGGTAGACTTAGCAGCAGGAAAAGATGACATTGCCAAGGTTAGGGGCCAGAGTGTATACATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

239

Amino Acids

27.7

Weight (kDa)

9.58

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AccI	GTMKAC	4 cut(s)	422, 577, 657, 708
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	693
AgsI	TTSAA	5 cut(s)	90, 190, 203, 254, 627
AluBI	AGCT	6 cut(s)	221, 250, 347, 442, 554, 632
AluI	AGCT	6 cut(s)	221, 250, 347, 442, 554, 632
Alw26I	GTCTC	2 cut(s)	129, 372
AlwI	GGATC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	4 cut(s)	231, 432, 620, 697
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	1 cut(s)	38
Asp700I	GAANNNNTTC	2 cut(s)	76, 158
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	4 cut(s)	232, 432, 503, 697
AsuC2I	CCSGG	1 cut(s)	603
AvaII	GGWCC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	677
BccI	CCATC	1 cut(s)	609
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	603
BcoDI	GTCTC	2 cut(s)	129, 372
BfaI	CTAG	2 cut(s)	443, 533
BfmI	CTRYAG	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	4 cut(s)	232, 432, 503, 697
BmiI	GGNNCC	2 cut(s)	234, 698
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	4 cut(s)	196, 358, 459, 501
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	2 cut(s)	9, 266
BpuMI	CCSGG	1 cut(s)	603
BsaAI	YACGTR	2 cut(s)	290, 581
BsaJI	CCNNGG	2 cut(s)	589, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	693
Bse1I	ACTGG	2 cut(s)	177, 249
Bse3DI	GCAATG	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	589, 687
BseGI	GGATG	2 cut(s)	313, 620
BseLI	CCNNNNNNNGG	1 cut(s)	693
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	4 cut(s)	59, 213, 309, 388
BseNI	ACTGG	2 cut(s)	177, 249
BseXI	GCAGC	1 cut(s)	677
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	4 cut(s)	233, 434, 622, 699
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	693
BsmAI	GTCTC	2 cut(s)	129, 372
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	4 cut(s)	233, 434, 622, 699
Bsp143I	GATC	2 cut(s)	583, 636
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	4 cut(s)	233, 434, 622, 699
BspCNI	CTCAG	4 cut(s)	60, 214, 310, 387
BspLI	GGNNCC	2 cut(s)	234, 698
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	177, 249
BssECI	CCNNGG	2 cut(s)	589, 687
BssMI	GATC	2 cut(s)	583, 636
BssNAI	GTATAC	2 cut(s)	423, 709
BssT1I	CCWWGG	2 cut(s)	589, 687
Bst1107I	GTATAC	2 cut(s)	423, 709
BstAPI	GCANNNNNTGC	1 cut(s)	522
BstBAI	YACGTR	2 cut(s)	290, 581
BstDEI	CTNAG	7 cut(s)	68, 222, 318, 374, 413, 539, 661
BstF5I	GGATG	2 cut(s)	313, 620
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	586, 639
BstMAI	GTCTC	2 cut(s)	129, 372
BstMBI	GATC	2 cut(s)	583, 636
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 344, 522
BstNSI	RCATGY	3 cut(s)	421, 520, 715
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	677
BstZ17I	GTATAC	2 cut(s)	423, 709
BsuRI	GGCC	4 cut(s)	233, 434, 622, 699
BtsCI	GGATG	2 cut(s)	313, 620
BtsI	GCAGTG	2 cut(s)	136, 312
BtsIMutI	CAGTG	3 cut(s)	136, 242, 312
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	4 cut(s)	232, 432, 503, 697
CviAII	CATG	6 cut(s)	81, 146, 151, 418, 517, 712
DdeI	CTNAG	7 cut(s)	68, 222, 318, 374, 413, 539, 661
DpnI	GATC	2 cut(s)	585, 638
DpnII	GATC	2 cut(s)	583, 636
DraI	TTTAAA	2 cut(s)	511, 649
DraIII	CACNNNGTG	1 cut(s)	605
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	589, 687
Eco47I	GGWCC	1 cut(s)	503
EcoT14I	CCWWGG	2 cut(s)	589, 687
EcoT22I	ATGCAT	1 cut(s)	474
ErhI	CCWWGG	2 cut(s)	589, 687
FaeI	CATG	6 cut(s)	84, 149, 154, 421, 520, 715
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	6 cut(s)	80, 145, 150, 417, 516, 711
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	4 cut(s)	422, 577, 657, 708
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	2 cut(s)	320, 627
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	2 cut(s)	443, 533
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	666
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	9, 266
HaeIII	GGCC	4 cut(s)	233, 434, 622, 699
HapII	CCGG	1 cut(s)	602
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	6 cut(s)	84, 149, 154, 421, 520, 715
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	3 cut(s)	14, 320, 574
HpaII	CCGG	1 cut(s)	602
Hpy166II	GTNNAC	4 cut(s)	423, 578, 658, 709
Hpy188I	TCNGA	2 cut(s)	13, 377
Hpy188III	TCNNGA	2 cut(s)	533, 627
Hpy8I	GTNNAC	4 cut(s)	423, 578, 658, 709
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	3 cut(s)	66, 450, 633
HpyCH4IV	ACGT	2 cut(s)	289, 580
HpyCH4V	TGCA	4 cut(s)	61, 472, 525, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 344, 522
HpyF3I	CTNAG	7 cut(s)	68, 222, 318, 374, 413, 539, 661
HpySE526I	ACGT	2 cut(s)	289, 580
Hsp92II	CATG	6 cut(s)	84, 149, 154, 421, 520, 715
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	2 cut(s)	583, 636
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	677
LweI	GCATC	4 cut(s)	196, 358, 459, 501
MaeI	CTAG	2 cut(s)	443, 533
MaeII	ACGT	2 cut(s)	289, 580
MaeIII	GTNAC	2 cut(s)	290, 446
MalI	GATC	2 cut(s)	585, 638
MboI	GATC	2 cut(s)	583, 636
MboII	GAAGA	6 cut(s)	47, 208, 215, 266, 269, 468
MluCI	AATT	3 cut(s)	38, 341, 566
MlyI	GAGTC	2 cut(s)	329, 583
MnlI	CCTC	2 cut(s)	19, 311
Mph1103I	ATGCAT	1 cut(s)	474
MroXI	GAANNNNTTC	2 cut(s)	76, 158
MseI	TTAA	2 cut(s)	510, 648
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	3 cut(s)	239, 344, 522
NciI	CCSGG	1 cut(s)	603
NdeII	GATC	2 cut(s)	583, 636
NlaIII	CATG	6 cut(s)	84, 149, 154, 421, 520, 715
NlaIV	GGNNCC	2 cut(s)	234, 698
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	3 cut(s)	421, 520, 715
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	2 cut(s)	76, 158
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	2 cut(s)	328, 582
PpsI	GAGTC	2 cut(s)	328, 582
Ppu21I	YACGTR	2 cut(s)	290, 581
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	234, 698
PspPI	GGNCC	4 cut(s)	232, 432, 503, 697
PsrI	GAACNNNNNNTAC	4 cut(s)	146, 178, 270, 302
PstI	CTGCAG	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	510, 648
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	2 cut(s)	583, 636
Sau96I	GGNCC	4 cut(s)	232, 432, 503, 697
SchI	GAGTC	2 cut(s)	329, 583
ScrFI	CCNGG	1 cut(s)	603
SfaNI	GCATC	4 cut(s)	196, 358, 459, 501
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	503
Sse9I	AATT	3 cut(s)	38, 341, 566
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	443, 533
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	2 cut(s)	589, 687
TaiI	ACGT	2 cut(s)	292, 583
TasI	AATT	3 cut(s)	38, 341, 566
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	510, 648
Tru9I	TTAA	2 cut(s)	510, 648
TscAI	CASTG	3 cut(s)	143, 249, 319
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	69, 167, 174
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	3 cut(s)	143, 249, 319
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	3 cut(s)	421, 520, 715
XmiI	GTMKAC	4 cut(s)	422, 577, 657, 708
XmnI	GAANNNNTTC	2 cut(s)	76, 158
XspI	CTAG	2 cut(s)	443, 533
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.