Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Forward (+)

8650446 .. 8655835

Gene Structure 5390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G049700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGACAAGCATGGCCGCAGAATTCGCATTTGTCAGAAATGGTAGCACCGCCACTACCACTACTGCTGCCGCTGCCTTGTTCAGCTCAAATTGGAAAGCTTCCGAAAGAAAGAGTCATCAGTCACTACACACTTCTTGCATGGATGACAAGAACAGGGTCTACAAACAACTGGGATTATTTTCTTTGAAAAAGAAGATTGAAGATACAGTTCTCCGAGCTGAGATGTTGGCCCCATTGGCATTGGAACTTGAAGAAGCAAGAAGAAATAAGCAGGAACAACAGATACGTGACTATAACCTTTGGGATGACACAGCTAAGTCCAGTGAGATTCTTGCCAAGTTAGCTGACAGTGCCAAAGTGGTTGATGCTCTTAAAGACTTGACATATAAGGCTGAAGAAGCAAAGCTGATAACGCAGTTAGCGGAGATAGATGCTATACATTATGGGCTTTTTAGGCAAGCATATGTTGCATCTCTAGATGTAAGCAAGCTTTTGGATCAGTATGAGATGTCCAAGCTTCTCAAGGGACCATATGACATGGAGGGAGCATGTCTAGTTATCAAAGCTGGAGGTGAAGGCTACCCTGAGGTATGGGTAAAACAACTACTAAGCATGTATACCAAATGGGCCAAAAAGCTAGGTTATAAAGGGAGGGTCATTGAGAAGCGTCCTTCCACAAATGGTGGCATCAAGTCAGCAACTATTGAGTTTGAATTTGAGTTTGCTTATGGCTATCTTTCCGGAGAGACAGGTGTTCACAACATTATAAGTTCGCAAAATGGATCTGCTTTGCATTTGGCTAGCTCAGCAAGTGTGGATGTTTTTCCTTTGTTTCTTGGAAAAGCTCATGACCTACAAATTGATGAGGAGGATTTAGTCGTCACATTGCCATCAATGCTTGAAGAAGAGCAGGGCCAAACTGGACCTTCAGTTTCCATCCAGCATATACCCACGAGTGTAACTGCGCAATCATCAGGTGAGAGGAGCCACTTTGCAAATAAGATCAAGGCCATTAACCGGTTGAAAGGCAAGCTTCTCATCCTTGCACTGGAACAAGGAGTTACTGAGGTTAGTGATATCAAGAAAGATGACATTGTCAATCTGTGGCAGAAAGAGACTCGAACGTACATGTATCATCCACACAAACTAGTGAAGGATGTAAAAACCGGCATCCAACTGCCTGACCTAATGTCTGTTTTGAATGGAAATCTTGAACCTCTTATTGTTGCTCATATTAATTCAAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

417

Amino Acids

46.27

Weight (kDa)

6.44

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	645, 767
Acc16I	TGCGCA	1 cut(s)	966
AccI	GTMKAC	2 cut(s)	159, 617
AccIII	TCCGGA	1 cut(s)	740
AciI	CCGC	4 cut(s)	15, 48, 69, 422
AclWI	GGATC	2 cut(s)	504, 790
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	20, 713
AcuI	CTGAAG	2 cut(s)	414, 912
AfaI	GTAC	1 cut(s)	1127
AfiI	CCNNNNNNNGG	2 cut(s)	1017, 1048
AflIII	ACRYGT	1 cut(s)	1128
AgeI	ACCGGT	1 cut(s)	1017
AgsI	TTSAA	9 cut(s)	187, 200, 251, 713, 902, 1024, 1201, 1214, 1242
AhdI	GACNNNNNGTC	1 cut(s)	1189
AhlI	ACTAGT	1 cut(s)	1147
Alw26I	GTCTC	2 cut(s)	740, 1109
AlwI	GGATC	2 cut(s)	504, 790
Aor13HI	TCCGGA	1 cut(s)	740
AoxI	GGCC	5 cut(s)	12, 228, 627, 913, 1008
ApeKI	GCWGC	2 cut(s)	65, 71
ApoI	RAATTY	2 cut(s)	20, 713
AseI	ATTAAT	1 cut(s)	1236
AsiGI	ACCGGT	1 cut(s)	1017
AspLEI	GCGC	1 cut(s)	967
AspS9I	GGNCC	5 cut(s)	229, 527, 627, 913, 923
AsuHPI	GGTGA	2 cut(s)	584, 989
AsuNHI	GCTAGC	1 cut(s)	800
AvaII	GGWCC	2 cut(s)	527, 923
AxyI	CCTNAGG	1 cut(s)	585
BauI	CACGAG	1 cut(s)	952
BbvI	GCAGC	2 cut(s)	52, 58
BccI	CCATC	2 cut(s)	898, 944
BcoDI	GTCTC	2 cut(s)	740, 1109
BcuI	ACTAGT	1 cut(s)	1147
BfaI	CTAG	5 cut(s)	476, 554, 638, 801, 1148
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	4 cut(s)	15, 66, 69, 72
BlpI	GCTNAGC	1 cut(s)	805
BlsI	GCNGC	4 cut(s)	16, 67, 70, 73
Bme18I	GGWCC	2 cut(s)	527, 923
BmeRI	GACNNNNNGTC	1 cut(s)	1189
BmgT120I	GGNCC	5 cut(s)	229, 527, 627, 913, 923
BmiI	GGNNCC	3 cut(s)	231, 528, 986
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	5 cut(s)	355, 421, 479, 696, 1179
BmtI	GCTAGC	1 cut(s)	804
BmuI	ACTGGG	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	805
BpuEI	CTTGAG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	287
BsaWI	WCCGGW	2 cut(s)	740, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	1017, 1048
Bse118I	RCCGGY	2 cut(s)	1017, 1166
Bse1I	ACTGG	4 cut(s)	174, 321, 925, 1053
Bse21I	CCTNAGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	884
BseAI	TCCGGA	1 cut(s)	740
BseGI	GGATG	8 cut(s)	148, 310, 823, 936, 1038, 1135, 1162, 1170
BseLI	CCNNNNNNNGG	2 cut(s)	1017, 1048
BseMI	GCAATG	1 cut(s)	884
BseMII	CTCAG	4 cut(s)	210, 576, 819, 1056
BseNI	ACTGG	4 cut(s)	174, 321, 925, 1053
BseRI	GAGGAG	2 cut(s)	881, 997
BseXI	GCAGC	2 cut(s)	52, 58
BshFI	GGCC	5 cut(s)	14, 230, 629, 915, 1010
BshTI	ACCGGT	1 cut(s)	1017
BsiSI	CCGG	3 cut(s)	741, 1018, 1167
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	2 cut(s)	1017, 1048
BsmAI	GTCTC	2 cut(s)	740, 1109
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	5 cut(s)	14, 230, 629, 915, 1010
Bsp13I	TCCGGA	1 cut(s)	740
Bsp143I	GATC	3 cut(s)	496, 782, 1002
Bsp1720I	GCTNAGC	1 cut(s)	805
BspACI	CCGC	4 cut(s)	15, 48, 69, 422
BspANI	GGCC	5 cut(s)	14, 230, 629, 915, 1010
BspCNI	CTCAG	4 cut(s)	211, 577, 818, 1057
BspEI	TCCGGA	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	3 cut(s)	231, 528, 986
BspOI	GCTAGC	1 cut(s)	804
BspPI	GGATC	2 cut(s)	504, 790
BspQI	GCTCTTC	1 cut(s)	900
BsrDI	GCAATG	1 cut(s)	884
BsrFI	RCCGGY	2 cut(s)	1017, 1166
BsrI	ACTGG	4 cut(s)	174, 321, 925, 1053
BssAI	RCCGGY	2 cut(s)	1017, 1166
BssMI	GATC	3 cut(s)	496, 782, 1002
BssNAI	GTATAC	1 cut(s)	618
BssSI	CACGAG	1 cut(s)	952
Bst1107I	GTATAC	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	952
Bst4CI	ACNGT	2 cut(s)	208, 350
Bst6I	CTCTTC	1 cut(s)	900
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	459, 488, 802, 1031
BstDEI	CTNAG	6 cut(s)	219, 315, 585, 608, 805, 1065
BstF5I	GGATG	8 cut(s)	148, 310, 823, 936, 1038, 1135, 1162, 1170
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	3 cut(s)	499, 785, 1005
BstMAI	GTCTC	2 cut(s)	740, 1109
BstMBI	GATC	3 cut(s)	496, 782, 1002
BstNSI	RCATGY	3 cut(s)	552, 616, 1132
BstV1I	GCAGC	2 cut(s)	52, 58
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
BstZ17I	GTATAC	1 cut(s)	618
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	5 cut(s)	14, 230, 629, 915, 1010
BtsCI	GGATG	8 cut(s)	148, 310, 823, 936, 1038, 1135, 1162, 1170
BtsIMutI	CAGTG	3 cut(s)	328, 355, 1046
Cac8I	GCNNGC	4 cut(s)	459, 488, 802, 1031
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	1 cut(s)	967
Cfr10I	RCCGGY	2 cut(s)	1017, 1166
Cfr13I	GGNCC	5 cut(s)	229, 527, 627, 913, 923
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	1126
CspAI	ACCGGT	1 cut(s)	1017
CviAII	CATG	7 cut(s)	10, 139, 538, 549, 613, 848, 1129
CviQI	GTAC	1 cut(s)	1126
DdeI	CTNAG	6 cut(s)	219, 315, 585, 608, 805, 1065
DpnI	GATC	3 cut(s)	498, 784, 1004
DpnII	GATC	3 cut(s)	496, 782, 1002
DriI	GACNNNNNGTC	1 cut(s)	1189
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	900
Eam1105I	GACNNNNNGTC	1 cut(s)	1189
EarI	CTCTTC	1 cut(s)	900
Eco32I	GATATC	1 cut(s)	1078
Eco47I	GGWCC	2 cut(s)	527, 923
Eco57I	CTGAAG	2 cut(s)	414, 912
Eco81I	CCTNAGG	1 cut(s)	585
EcoRI	GAATTC	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	1078
FaeI	CATG	7 cut(s)	13, 142, 541, 552, 616, 851, 1132
FalI	AAGNNNNNCTT	2 cut(s)	1017, 1049
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	7 cut(s)	9, 138, 537, 548, 612, 847, 1128
FauNDI	CATATG	2 cut(s)	463, 532
FblI	GTMKAC	2 cut(s)	159, 617
Fnu4HI	GCNGC	4 cut(s)	15, 66, 69, 72
FokI	GGATG	8 cut(s)	155, 317, 830, 923, 1025, 1122, 1157, 1169
Fsp4HI	GCNGC	4 cut(s)	15, 66, 69, 72
FspBI	CTAG	5 cut(s)	476, 554, 638, 801, 1148
FspI	TGCGCA	1 cut(s)	966
GlaI	GCGC	1 cut(s)	966
GluI	GCNGC	4 cut(s)	15, 66, 69, 72
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	5 cut(s)	14, 230, 629, 915, 1010
HapII	CCGG	3 cut(s)	741, 1018, 1167
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	1 cut(s)	967
Hin1II	CATG	7 cut(s)	13, 142, 541, 552, 616, 851, 1132
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HindIII	AAGCTT	4 cut(s)	96, 488, 515, 1031
HinfI	GANTC	3 cut(s)	112, 328, 1117
HpaII	CCGG	3 cut(s)	741, 1018, 1167
HphI	GGTGA	2 cut(s)	584, 989
Hpy166II	GTNNAC	3 cut(s)	160, 618, 757
Hpy188I	TCNGA	3 cut(s)	35, 103, 215
Hpy188III	TCNNGA	6 cut(s)	476, 741, 848, 1081, 1211, 1242
Hpy8I	GTNNAC	3 cut(s)	160, 618, 757
HpyAV	CCTTC	4 cut(s)	569, 681, 936, 1147
HpyCH4III	ACNGT	2 cut(s)	208, 350
HpyCH4IV	ACGT	2 cut(s)	286, 1124
HpyCH4V	TGCA	5 cut(s)	138, 470, 793, 995, 1046
HpyF3I	CTNAG	6 cut(s)	219, 315, 585, 608, 805, 1065
HpySE526I	ACGT	2 cut(s)	286, 1124
Hsp92II	CATG	7 cut(s)	13, 142, 541, 552, 616, 851, 1132
HspAI	GCGC	1 cut(s)	965
Kpn2I	TCCGGA	1 cut(s)	740
Kzo9I	GATC	3 cut(s)	496, 782, 1002
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	2 cut(s)	545, 984
Lsp1109I	GCAGC	2 cut(s)	52, 58
LweI	GCATC	5 cut(s)	355, 421, 479, 696, 1179
MaeI	CTAG	5 cut(s)	476, 554, 638, 801, 1148
MaeII	ACGT	2 cut(s)	286, 1124
MaeIII	GTNAC	5 cut(s)	120, 287, 880, 958, 1060
MalI	GATC	3 cut(s)	498, 784, 1004
MboI	GATC	3 cut(s)	496, 782, 1002
MboII	GAAGA	7 cut(s)	205, 212, 263, 273, 407, 914, 917
MflI	RGATCY	1 cut(s)	782
MluCI	AATT	5 cut(s)	20, 88, 713, 858, 1237
MlyI	GAGTC	2 cut(s)	121, 1111
MmeI	TCCRAC	1 cut(s)	1198
MnlI	CCTC	9 cut(s)	535, 563, 580, 645, 859, 862, 975, 1060, 1227
MroI	TCCGGA	1 cut(s)	740
MseI	TTAA	3 cut(s)	372, 1014, 1236
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	741, 1018, 1167
NdeI	CATATG	2 cut(s)	463, 532
NdeII	GATC	3 cut(s)	496, 782, 1002
NheI	GCTAGC	1 cut(s)	800
NlaIII	CATG	7 cut(s)	13, 142, 541, 552, 616, 851, 1132
NlaIV	GGNNCC	3 cut(s)	231, 528, 986
NmuCI	GTSAC	3 cut(s)	120, 287, 880
NsbI	TGCGCA	1 cut(s)	966
NspI	RCATGY	3 cut(s)	552, 616, 1132
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	1128
PciSI	GCTCTTC	1 cut(s)	900
PfeI	GAWTC	1 cut(s)	328
PflFI	GACNNNGTC	1 cut(s)	1094
PinAI	ACCGGT	1 cut(s)	1017
PkrI	GCNGC	4 cut(s)	16, 67, 70, 73
PleI	GAGTC	2 cut(s)	120, 1111
PpsI	GAGTC	2 cut(s)	120, 1111
Ppu21I	YACGTR	1 cut(s)	287
PscI	ACATGT	1 cut(s)	1128
PshBI	ATTAAT	1 cut(s)	1236
PsiI	TTATAA	2 cut(s)	645, 767
PspN4I	GGNNCC	3 cut(s)	231, 528, 986
PspPI	GGNCC	5 cut(s)	229, 527, 627, 913, 923
PsrI	GAACNNNNNNTAC	4 cut(s)	143, 175, 267, 299
PsuI	RGATCY	1 cut(s)	782
PsyI	GACNNNGTC	1 cut(s)	1094
RsaI	GTAC	1 cut(s)	1127
RsaNI	GTAC	1 cut(s)	1126
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	3 cut(s)	372, 1014, 1236
SatI	GCNGC	4 cut(s)	15, 66, 69, 72
Sau3AI	GATC	3 cut(s)	496, 782, 1002
Sau96I	GGNCC	5 cut(s)	229, 527, 627, 913, 923
SchI	GAGTC	2 cut(s)	121, 1111
SfaNI	GCATC	5 cut(s)	355, 421, 479, 696, 1179
SinI	GGWCC	2 cut(s)	527, 923
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	1147
Sse9I	AATT	5 cut(s)	20, 88, 713, 858, 1237
SsiI	CCGC	4 cut(s)	15, 48, 69, 422
SspMI	CTAG	5 cut(s)	476, 554, 638, 801, 1148
TaaI	ACNGT	2 cut(s)	208, 350
TaiI	ACGT	2 cut(s)	289, 1127
TaqI	TCGA	1 cut(s)	1120
TasI	AATT	5 cut(s)	20, 88, 713, 858, 1237
TauI	GCSGC	2 cut(s)	17, 71
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	3 cut(s)	372, 1014, 1236
Tru9I	TTAA	3 cut(s)	372, 1014, 1236
TscAI	CASTG	3 cut(s)	328, 355, 1053
TseFI	GTSAC	3 cut(s)	120, 287, 880
TseI	GCWGC	2 cut(s)	65, 71
Tsp45I	GTSAC	3 cut(s)	120, 287, 880
TspRI	CASTG	3 cut(s)	328, 355, 1053
Tth111I	GACNNNGTC	1 cut(s)	1094
VpaK11BI	GGWCC	2 cut(s)	527, 923
VspI	ATTAAT	1 cut(s)	1236
XapI	RAATTY	2 cut(s)	20, 713
XbaI	TCTAGA	1 cut(s)	475
XceI	RCATGY	3 cut(s)	552, 616, 1132
XmiI	GTMKAC	2 cut(s)	159, 617
XspI	CTAG	5 cut(s)	476, 554, 638, 801, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.