Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

37554862 .. 37571399

Gene Structure 16538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG332800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGAGGAGTTGGGAGGTCAACTGGGAAGGCTTCTCTTACTGGGTTTGCAGAAATTAAGGATGTGATTGCTGTCTGCAAATTGGTCTCTAAGAATTTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGTTGCTGAGAAGAGCAGGTTCTACAAACAACTGGGATTATTTTCATTGAAAAAGAAGATTGAAGATGCTGTTCTCCGAGCTGAGATGTTGGCCCCATTGGCACTAGAGCTTGAAGAAGAAAGACGGAATGAGCAAGAACAACTGATACGCGACTATGACCTCTGGGATGACACTGCTGAGTCCAATAAGGTTCTTGCCAAATTGGCTGATAGTGTTAGAGTGGTTGATGCTCTCAGAGACTTGACATATAAGGCTGAAGAAGCAAAACTTATTACACAGTTAGCAGAGATAGATGCTATCAATTATGGGCTTTTTAGGCAAGCATATGATGCATCTCTGGATATGAACAAGATTTTGAATAAATATGAGATTTCCATGCTTCTTAAGGGACCATATGACATGGAGGGAGCATGTCTAATTATAAAAGCTAGTGGCACAGGGGCTACCCTGAGGAGAGGCAGTCGAGGTCTTGTTAAAAGCATGCTGCGCAAAAATCCAGAACTTAGACCAAGTGCAGATTTTGGTGGAGGTAACCAAGACAATCTCCCCACTCAAAATTTTGCTAAGGCACAAGACATGCATGGCAGTGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

243

Amino Acids

26.82

Weight (kDa)

8.71

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
Acc16I	TGCGCA	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	141
AccII	CGCG	1 cut(s)	285
AcsI	RAATTY	3 cut(s)	94, 111, 691
AcuI	CTGAAG	1 cut(s)	411
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	184, 197, 248, 493
AluBI	AGCT	3 cut(s)	215, 244, 563
AluI	AGCT	3 cut(s)	215, 244, 563
Alw26I	GTCTC	2 cut(s)	91, 366
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	3 cut(s)	94, 111, 691
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	226, 524
AvaII	GGWCC	1 cut(s)	524
AxyI	CCTNAGG	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	91, 366
BfaI	CTAG	2 cut(s)	239, 564
BfmI	CTRYAG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	141
BglI	GCCNNNNNGGC	2 cut(s)	233, 338
BisI	GCNGC	1 cut(s)	620
BlsI	GCNGC	1 cut(s)	621
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	226, 524
BmiI	GGNNCC	2 cut(s)	228, 525
BmrI	ACTGGG	3 cut(s)	33, 51, 176
BmsI	GCATC	5 cut(s)	190, 352, 418, 454, 476
BmuI	ACTGGG	3 cut(s)	33, 51, 176
Bpu10I	CCTNAGC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bse1I	ACTGG	3 cut(s)	28, 46, 171
Bse21I	CCTNAGG	1 cut(s)	584
BseGI	GGATG	2 cut(s)	67, 307
BseMII	CTCAG	5 cut(s)	132, 207, 303, 382, 575
BseNI	ACTGG	3 cut(s)	28, 46, 171
BseRI	GAGGAG	2 cut(s)	21, 601
BseXI	GCAGC	1 cut(s)	606
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	537
BsmAI	GTCTC	2 cut(s)	91, 366
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	5 cut(s)	133, 208, 304, 381, 576
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	228, 525
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	140
BspTI	CTTAAG	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	91
BsrI	ACTGG	3 cut(s)	28, 46, 171
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	518
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	456, 617
BstDEI	CTNAG	8 cut(s)	90, 141, 216, 312, 368, 584, 638, 699
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	67, 307
BstFNI	CGCG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	624
BstMAI	GTCTC	2 cut(s)	91, 366
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 338, 395, 451, 464, 621
BstNSI	RCATGY	3 cut(s)	549, 619, 715
BstPI	GGTNACC	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	606
Bsu36I	CCTNAGG	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	67, 307
BtsI	GCAGTG	2 cut(s)	306, 727
BtsIMutI	CAGTG	2 cut(s)	306, 727
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	456, 617
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	2 cut(s)	226, 524
CviAII	CATG	6 cut(s)	511, 535, 546, 616, 712, 716
CviJI	RGCY	9 cut(s)	32, 215, 227, 244, 341, 389, 445, 563, 578
CviKI_1	RGCY	9 cut(s)	32, 215, 227, 244, 341, 389, 445, 563, 578
DdeI	CTNAG	8 cut(s)	90, 141, 216, 312, 368, 584, 638, 699
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	665
EcoT22I	ATGCAT	2 cut(s)	469, 717
FaeI	CATG	6 cut(s)	514, 538, 549, 619, 715, 719
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	6 cut(s)	510, 534, 545, 615, 711, 715
FauNDI	CATATG	2 cut(s)	460, 529
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	2 cut(s)	74, 314
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	2 cut(s)	239, 564
FspI	TGCGCA	1 cut(s)	623
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	6 cut(s)	514, 538, 549, 619, 715, 719
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	212, 371
Hpy188III	TCNNGA	2 cut(s)	473, 632
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	6 cut(s)	50, 78, 134, 467, 650, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 338, 395, 451, 464, 621
HpyF3I	CTNAG	8 cut(s)	90, 141, 216, 312, 368, 584, 638, 699
Hsp92II	CATG	6 cut(s)	514, 538, 549, 619, 715, 719
HspAI	GCGC	1 cut(s)	622
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	542
LpnPI	CCDG	9 cut(s)	9, 27, 136, 152, 283, 458, 558, 596, 645
Lsp1109I	GCAGC	1 cut(s)	606
LweI	GCATC	5 cut(s)	190, 352, 418, 454, 476
MaeI	CTAG	2 cut(s)	239, 564
MaeIII	GTNAC	1 cut(s)	665
MboII	GAAGA	7 cut(s)	120, 157, 202, 209, 260, 263, 404
MluCI	AATT	9 cut(s)	54, 80, 94, 111, 335, 436, 552, 691, 727
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	9, 305, 532, 579, 584, 593, 656
Mph1103I	ATGCAT	2 cut(s)	469, 717
MseI	TTAA	4 cut(s)	57, 519, 609, 730
MslI	CAYNNNNRTG	1 cut(s)	720
MspCI	CTTAAG	1 cut(s)	518
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	6 cut(s)	233, 338, 395, 451, 464, 621
NdeI	CATATG	2 cut(s)	460, 529
NlaIII	CATG	6 cut(s)	514, 538, 549, 619, 715, 719
NlaIV	GGNNCC	2 cut(s)	228, 525
NsbI	TGCGCA	1 cut(s)	623
NsiI	ATGCAT	2 cut(s)	469, 717
NspI	RCATGY	3 cut(s)	549, 619, 715
PaeI	GCATGC	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	621
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	557
PspEI	GGTNACC	1 cut(s)	665
PspN4I	GGNNCC	2 cut(s)	228, 525
PspPI	GGNCC	2 cut(s)	226, 524
PsrI	GAACNNNNNNTAC	2 cut(s)	264, 296
PstI	CTGCAG	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	57, 519, 609, 730
SatI	GCNGC	1 cut(s)	620
Sau96I	GGNCC	2 cut(s)	226, 524
SchI	GAGTC	1 cut(s)	323
SetI	ASST	9 cut(s)	20, 155, 217, 246, 297, 327, 565, 604, 667
SfaNI	GCATC	5 cut(s)	190, 352, 418, 454, 476
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SphI	GCATGC	1 cut(s)	619
Sse9I	AATT	9 cut(s)	54, 80, 94, 111, 335, 436, 552, 691, 727
SspMI	CTAG	2 cut(s)	239, 564
TaaI	ACNGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	598
TasI	AATT	9 cut(s)	54, 80, 94, 111, 335, 436, 552, 691, 727
Tru1I	TTAA	4 cut(s)	57, 519, 609, 730
Tru9I	TTAA	4 cut(s)	57, 519, 609, 730
TscAI	CASTG	2 cut(s)	313, 727
TseI	GCWGC	1 cut(s)	619
TspDTI	ATGAA	2 cut(s)	168, 494
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	313, 727
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	3 cut(s)	94, 111, 691
XceI	RCATGY	3 cut(s)	549, 619, 715
XspI	CTAG	2 cut(s)	239, 564
Zsp2I	ATGCAT	2 cut(s)	469, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.