Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Forward (+)

32604400 .. 32608756

Gene Structure 4357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCCACCGAGTCCGCATTTGTCAGAAATGGCGGGAGCAGCAGCAGCGCCACCACTGCTGCCTTATTCAGCAGCTCAGCGTGGAAACATTCCAAGAGAAAGACCCAGCAGTCTCTGCACGCTCACTGCGCCCATGACAAGAACAGGTTCTACAAACAACTGGGATTATTTTCATTGAAAAAGAAGATTGAAGATGCTGTTCTCCGAGCTGAGATGTTGGCCCCATTGGCACTGGAGCTTGAAGAAGAAAGACGGAATGAGCAAGAACAACTGGTACGCGACTATGACCTCTGGGATGACACTGCTGAGTCCAATGAGGTTCTTGCCAAATTGGCTGATAGTGTTAGAGTGGTTGACGCACTCAGAGACTTGACATATAAGGCTGAAGAAGCAAAGCTTATTACACAGTTAGCAGAGATAGATGCTGTCAATTATGGGCTTTTTAGGCAAGCGTATGATGCATCTCTGGATATGAGCAAGATTTTGAATAAATACGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGTGCATGTCTAATTATAAAAGCTGGTGGCAAAGGCTACCCTGAGGTTTGGGTGAAACAACTACTAAGCATGTATACCAAATGGGCCAGAAAGCTAGGTTACAAAGGAAGGGTAATAGAGAAGTGTTCTTCCACGAATGGTGGCATCAAGTCAGCAACTATTGAGTTTGAACATGAGTTTGCTTTTGGTTATCTATCAGGAGAGGCGGGTGTTCACTACATCATAAATTCTAAAAATGGATCTGCTGTGCACGAGCAGGCTAGCTCAGCAAGCGTGGATGTTGTTCCTCTATTTCTTGGACGAGCTTATGACATACAAATTGACGAGGAAGATTTAATTATCATATTGCCATCAAAGCTTGAAGAAAAGCAGAGCCAAAATGGTCCTTCAGTTTACATTCACCATAAACCCACAGGCATAAGTGTCCAGTCATCAGGGGAGAGGAGCCACTTTGCAAATAAGATGAAAGCCATGAACAGATTGAAAGCCAAGCTTCTCATCCTTGCATTGGAACAAGGAGTTACCAAGCCTAGTGATATCAAAAAAGATGAGATTGTCAATGTGTGGCAAAAGGAGACTCGAAGATACATGTCTCATCCACATAAGTTAGTCAAGGATGTAAAAACGGGTATCCAACTACCTGACCTTATGTCTGTTTTGGATGGAAATCTTGAACCTCTTATTGCTGCTCATATTAATATAAGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

414

Amino Acids

46.35

Weight (kDa)

8.17

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	83 - 252	5.9e-22	PCRF domain
RF-1	PF00472	308 - 385	4.7e-11	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AasI	GACNNNNNNGTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	608
AccII	CGCG	1 cut(s)	279
AciI	CCGC	3 cut(s)	15, 33, 740
AclWI	GGATC	1 cut(s)	781
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	760
AcuI	CTGAAG	2 cut(s)	405, 906
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	1042
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	1122
AgsI	TTSAA	8 cut(s)	178, 191, 242, 487, 704, 896, 1018, 1208
AhdI	GACNNNNNGTC	1 cut(s)	1183
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	4 cut(s)	117, 360, 1103, 1131
Alw44I	GTGCAC	1 cut(s)	782
AlwI	GGATC	1 cut(s)	781
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	3 cut(s)	3, 219, 618
ApaLI	GTGCAC	1 cut(s)	782
ApeKI	GCWGC	6 cut(s)	39, 42, 45, 59, 72, 1220
ApoI	RAATTY	1 cut(s)	760
AseI	ATTAAT	1 cut(s)	1230
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	50, 131
AspS9I	GGNCC	4 cut(s)	220, 518, 618, 917
AsuHPI	GGTGA	2 cut(s)	598, 926
AsuNHI	GCTAGC	1 cut(s)	794
AvaII	GGWCC	2 cut(s)	518, 917
AxyI	CCTNAGG	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	786
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	6 cut(s)	46, 51, 54, 57, 84, 1207
BccI	CCATC	2 cut(s)	892, 1190
BciVI	GTATCC	1 cut(s)	1175
BcoDI	GTCTC	4 cut(s)	117, 360, 1103, 1131
BfaI	CTAG	3 cut(s)	629, 795, 1065
BfoI	RGCGCY	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	1175
BglI	GCCNNNNNGGC	2 cut(s)	227, 332
BisI	GCNGC	6 cut(s)	40, 43, 46, 60, 73, 1221
BlpI	GCTNAGC	2 cut(s)	76, 799
BlsI	GCNGC	6 cut(s)	41, 44, 47, 61, 74, 1222
Bme18I	GGWCC	2 cut(s)	518, 917
BmeRI	GACNNNNNGTC	1 cut(s)	1183
BmgT120I	GGNCC	4 cut(s)	220, 518, 618, 917
BmiI	GGNNCC	3 cut(s)	222, 519, 980
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	5 cut(s)	184, 412, 448, 470, 687
BmtI	GCTAGC	1 cut(s)	798
BmuI	ACTGGG	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	2 cut(s)	76, 799
BsaBI	GATNNNNATC	1 cut(s)	1200
Bsc4I	CCNNNNNNNGG	1 cut(s)	1042
Bse1I	ACTGG	4 cut(s)	165, 237, 276, 961
Bse21I	CCTNAGG	1 cut(s)	576
Bse8I	GATNNNNATC	1 cut(s)	1200
BseGI	GGATG	6 cut(s)	301, 817, 1032, 1129, 1156, 1201
BseJI	GATNNNNATC	1 cut(s)	1200
BseLI	CCNNNNNNNGG	1 cut(s)	1042
BseMII	CTCAG	6 cut(s)	90, 201, 297, 376, 567, 813
BseNI	ACTGG	4 cut(s)	165, 237, 276, 961
BseRI	GAGGAG	1 cut(s)	991
BseSI	GKGCMC	1 cut(s)	786
BseXI	GCAGC	6 cut(s)	46, 51, 54, 57, 84, 1207
BseYI	CCCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	5, 221, 620
BsiHKAI	GWGCWC	1 cut(s)	786
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	1042
BsmAI	GTCTC	4 cut(s)	117, 360, 1103, 1131
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	3 cut(s)	5, 221, 620
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	1 cut(s)	773
Bsp1720I	GCTNAGC	2 cut(s)	76, 799
BspACI	CCGC	3 cut(s)	15, 33, 740
BspANI	GGCC	3 cut(s)	5, 221, 620
BspCNI	CTCAG	6 cut(s)	89, 202, 298, 375, 568, 812
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	222, 519, 980
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	1 cut(s)	781
BspTI	CTTAAG	1 cut(s)	512
BsrI	ACTGG	4 cut(s)	165, 237, 276, 961
BssMI	GATC	1 cut(s)	773
BssNAI	GTATAC	1 cut(s)	609
BssSI	CACGAG	1 cut(s)	785
Bst1107I	GTATAC	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	785
Bst4CI	ACNGT	2 cut(s)	408, 1242
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	5 cut(s)	120, 450, 792, 796, 805
BstDEI	CTNAG	7 cut(s)	76, 210, 306, 362, 576, 599, 799
BstF5I	GGATG	6 cut(s)	301, 817, 1032, 1129, 1156, 1201
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 131
BstKTI	GATC	1 cut(s)	776
BstMAI	GTCTC	4 cut(s)	117, 360, 1103, 1131
BstMBI	GATC	1 cut(s)	773
BstNSI	RCATGY	3 cut(s)	543, 607, 1126
BstSLI	GKGCMC	1 cut(s)	786
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	6 cut(s)	46, 51, 54, 57, 84, 1207
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BstZ17I	GTATAC	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	1175
BsuRI	GGCC	3 cut(s)	5, 221, 620
BtsCI	GGATG	6 cut(s)	301, 817, 1032, 1129, 1156, 1201
BtsI	GCAGTG	3 cut(s)	54, 124, 300
BtsIMutI	CAGTG	4 cut(s)	54, 124, 230, 300
Cac8I	GCNNGC	5 cut(s)	120, 450, 792, 796, 805
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	50, 131
Cfr13I	GGNCC	4 cut(s)	220, 518, 618, 917
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	7 cut(s)	134, 529, 540, 604, 707, 1006, 1123
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	7 cut(s)	76, 210, 306, 362, 576, 599, 799
DpnI	GATC	1 cut(s)	775
DpnII	GATC	1 cut(s)	773
DrdI	GACNNNNNNGTC	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	1183
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	1183
Eco32I	GATATC	1 cut(s)	1072
Eco47I	GGWCC	2 cut(s)	518, 917
Eco57I	CTGAAG	2 cut(s)	405, 906
Eco81I	CCTNAGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	1072
EcoT22I	ATGCAT	1 cut(s)	463
FaeI	CATG	7 cut(s)	137, 532, 543, 607, 710, 1009, 1126
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 1011, 1043
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	7 cut(s)	133, 528, 539, 603, 706, 1005, 1122
FauI	CCCGC	2 cut(s)	26, 733
FauNDI	CATATG	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	6 cut(s)	40, 43, 46, 60, 73, 1221
FokI	GGATG	6 cut(s)	308, 824, 1019, 1116, 1163, 1208
Fsp4HI	GCNGC	6 cut(s)	40, 43, 46, 60, 73, 1221
FspBI	CTAG	3 cut(s)	629, 795, 1065
GlaI	GCGC	2 cut(s)	49, 130
GluI	GCNGC	6 cut(s)	40, 43, 46, 60, 73, 1221
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	5, 221, 620
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	50, 131
Hin1II	CATG	7 cut(s)	137, 532, 543, 607, 710, 1009, 1126
Hin6I	GCGC	2 cut(s)	48, 129
HinP1I	GCGC	2 cut(s)	48, 129
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	4 cut(s)	395, 506, 890, 1025
HinfI	GANTC	3 cut(s)	11, 308, 1111
HphI	GGTGA	2 cut(s)	598, 926
Hpy166II	GTNNAC	5 cut(s)	355, 609, 748, 784, 928
Hpy188I	TCNGA	3 cut(s)	26, 206, 365
Hpy188III	TCNNGA	3 cut(s)	467, 732, 1205
Hpy8I	GTNNAC	5 cut(s)	355, 609, 748, 784, 928
HpyAV	CCTTC	2 cut(s)	636, 930
HpyCH4III	ACNGT	2 cut(s)	408, 1242
HpyCH4V	TGCA	6 cut(s)	118, 461, 539, 784, 989, 1040
HpyF3I	CTNAG	7 cut(s)	76, 210, 306, 362, 576, 599, 799
Hsp92II	CATG	7 cut(s)	137, 532, 543, 607, 710, 1009, 1126
HspAI	GCGC	2 cut(s)	48, 129
Kzo9I	GATC	1 cut(s)	773
LmnI	GCTCC	3 cut(s)	36, 235, 978
Lsp1109I	GCAGC	6 cut(s)	46, 51, 54, 57, 84, 1207
LweI	GCATC	5 cut(s)	184, 412, 448, 470, 687
MaeI	CTAG	3 cut(s)	629, 795, 1065
MaeIII	GTNAC	2 cut(s)	632, 1054
MalI	GATC	1 cut(s)	775
MboI	GATC	1 cut(s)	773
MboII	GAAGA	9 cut(s)	196, 203, 254, 257, 398, 654, 875, 908, 1128
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	1 cut(s)	786
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	329, 430, 546, 760, 852, 870
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	20, 317, 1105
MmeI	TCCRAC	1 cut(s)	1192
MnlI	CCTC	9 cut(s)	299, 310, 526, 571, 730, 831, 853, 969, 1221
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	513, 869, 1230
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	1 cut(s)	773
NheI	GCTAGC	1 cut(s)	794
NlaIII	CATG	7 cut(s)	137, 532, 543, 607, 710, 1009, 1126
NlaIV	GGNNCC	3 cut(s)	222, 519, 980
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	3 cut(s)	543, 607, 1126
PciI	ACATGT	1 cut(s)	1122
PdmI	GAANNNNTTC	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	41, 44, 47, 61, 74, 1222
PleI	GAGTC	3 cut(s)	19, 316, 1105
PpsI	GAGTC	3 cut(s)	19, 316, 1105
PscI	ACATGT	1 cut(s)	1122
PshBI	ATTAAT	1 cut(s)	1230
PsiI	TTATAA	1 cut(s)	551
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	222, 519, 980
PspPI	GGNCC	4 cut(s)	220, 518, 618, 917
PsrI	GAACNNNNNNTAC	4 cut(s)	134, 166, 258, 290
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	773
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	513, 869, 1230
SatI	GCNGC	6 cut(s)	40, 43, 46, 60, 73, 1221
Sau3AI	GATC	1 cut(s)	773
Sau96I	GGNCC	4 cut(s)	220, 518, 618, 917
SchI	GAGTC	3 cut(s)	20, 317, 1105
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	5 cut(s)	184, 412, 448, 470, 687
SinI	GGWCC	2 cut(s)	518, 917
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	6 cut(s)	329, 430, 546, 760, 852, 870
SsiI	CCGC	3 cut(s)	15, 33, 740
SspMI	CTAG	3 cut(s)	629, 795, 1065
TaaI	ACNGT	2 cut(s)	408, 1242
TaqI	TCGA	1 cut(s)	1114
TasI	AATT	6 cut(s)	329, 430, 546, 760, 852, 870
Tru1I	TTAA	3 cut(s)	513, 869, 1230
Tru9I	TTAA	3 cut(s)	513, 869, 1230
TscAI	CASTG	4 cut(s)	61, 131, 237, 307
TseI	GCWGC	6 cut(s)	39, 42, 45, 59, 72, 1220
TspDTI	ATGAA	3 cut(s)	162, 1013, 1022
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	4 cut(s)	61, 131, 237, 307
Vha464I	CTTAAG	1 cut(s)	512
VneI	GTGCAC	1 cut(s)	782
VpaK11BI	GGWCC	2 cut(s)	518, 917
VspI	ATTAAT	1 cut(s)	1230
XapI	RAATTY	1 cut(s)	760
XceI	RCATGY	3 cut(s)	543, 607, 1126
XmiI	GTMKAC	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	3 cut(s)	629, 795, 1065
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.