Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Reverse (-)

82925792 .. 82927350

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAATTCAAAATTATAATTGAAGATGTTGTTCTCCGAGCTGAGATGTTGGCCCCATTGGCACTGGAGCTTGAAGAAGAAAGACGGAATGAGCAAGAACAACTGATACACGACCATGACCTTTGGGATGACACTGCTGAGTCCAATGAGGTTCTTGCCAACTTGGCTGATAGTGTTAGAGTGGTTGATGCTCTCAGAGACTTGACATATAAGGCTGAAGAAGCAAAACTTATTACACAGTTAGCAGAGATATATGCTATCAATTATGGGCTTTTTAGGAAGGCATATGATGCATCTCTAGATATGAGCAAGATTTTGAATAAATATGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGAGCATGTCTAATTATAAAAGCTAGTGGCACAGGCTACCCTGAGGTTTCTGTAAAACAACAACTAAGCATGTATACCAAATGGGCCAGAAAGCTAGGTTACAAAGGAAGGGTAGTAGAGATGCATTCTTCCACGAATGGTGGCATCAAGTCAGCAACTATTGAGTTTGCTTTTGGTTATCTATCAGGAGAGGTAGGTGTGCACTACATCATAAATTCTAAAAACGGATCTGCTGTGCATGAGGTACAACTCTGTCTTGTTGATATCAATCCAATATTAAAGTTTAGAACTGTCGTATTTTCTTTTCCTAAAAAAAGAAGTCACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

231

Amino Acids

26.19

Weight (kDa)

5.74

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	27 - 191	2e-15	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	17, 383
AccI	GTMKAC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	601
AcsI	RAATTY	2 cut(s)	5, 580
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	612
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	4 cut(s)	10, 23, 74, 319
AluBI	AGCT	5 cut(s)	41, 70, 340, 389, 460
AluI	AGCT	5 cut(s)	41, 70, 340, 389, 460
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	1 cut(s)	601
AoxI	GGCC	2 cut(s)	51, 450
ApaLI	GTGCAC	1 cut(s)	566
ApoI	RAATTY	2 cut(s)	5, 580
AspS9I	GGNCC	3 cut(s)	52, 350, 450
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	3 cut(s)	299, 390, 461
BfrI	CTTAAG	1 cut(s)	344
BglI	GCCNNNNNGGC	2 cut(s)	59, 164
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	52, 350, 450
BmiI	GGNNCC	2 cut(s)	54, 351
BmsI	GCATC	5 cut(s)	178, 280, 302, 477, 519
BpmI	CTGGAG	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	633
Bse1I	ACTGG	2 cut(s)	69, 695
Bse21I	CCTNAGG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	633
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	633
BseMII	CTCAG	4 cut(s)	33, 129, 208, 399
BseNI	ACTGG	2 cut(s)	69, 695
BseSI	GKGCMC	1 cut(s)	570
BshFI	GGCC	2 cut(s)	53, 452
BsiHKAI	GWGCWC	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	53, 452
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	1 cut(s)	593
BspANI	GGCC	2 cut(s)	53, 452
BspCNI	CTCAG	4 cut(s)	34, 130, 207, 400
BspLI	GGNNCC	2 cut(s)	54, 351
BspPI	GGATC	1 cut(s)	601
BspTI	CTTAAG	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	69, 695
BssMI	GATC	1 cut(s)	593
BssNAI	GTATAC	1 cut(s)	441
Bst1107I	GTATAC	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	240, 658
BstAFI	CTTAAG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstDEI	CTNAG	5 cut(s)	42, 138, 194, 408, 431
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	596
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	593
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 164, 221, 290
BstNSI	RCATGY	2 cut(s)	375, 439
BstSLI	GKGCMC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BstZ17I	GTATAC	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	53, 452
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	62, 132, 688
Cfr13I	GGNCC	3 cut(s)	52, 350, 450
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	5 cut(s)	116, 361, 372, 436, 605
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	5 cut(s)	42, 138, 194, 408, 431
DpnI	GATC	1 cut(s)	595
DpnII	GATC	1 cut(s)	593
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	5
EcoRV	GATATC	1 cut(s)	631
EcoT22I	ATGCAT	2 cut(s)	295, 492
FaeI	CATG	5 cut(s)	119, 364, 375, 439, 608
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	5 cut(s)	115, 360, 371, 435, 604
FauNDI	CATATG	2 cut(s)	286, 355
FblI	GTMKAC	1 cut(s)	440
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	3 cut(s)	299, 390, 461
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	53, 452
Hin1II	CATG	5 cut(s)	119, 364, 375, 439, 608
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	441, 568
Hpy188I	TCNGA	2 cut(s)	38, 197
Hpy188III	TCNNGA	2 cut(s)	299, 552
Hpy8I	GTNNAC	2 cut(s)	441, 568
HpyAV	CCTTC	2 cut(s)	274, 468
HpyCH4III	ACNGT	2 cut(s)	240, 658
HpyCH4V	TGCA	4 cut(s)	293, 490, 568, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 164, 221, 290
HpyF3I	CTNAG	5 cut(s)	42, 138, 194, 408, 431
Hsp92II	CATG	5 cut(s)	119, 364, 375, 439, 608
Kzo9I	GATC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	67, 368
LpnPI	CCDG	6 cut(s)	50, 384, 420, 466, 537, 676
LweI	GCATC	5 cut(s)	178, 280, 302, 477, 519
MaeI	CTAG	3 cut(s)	299, 390, 461
MaeIII	GTNAC	2 cut(s)	464, 686
MalI	GATC	1 cut(s)	595
MboI	GATC	1 cut(s)	593
MboII	GAAGA	5 cut(s)	35, 86, 89, 230, 486
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	6 cut(s)	5, 12, 18, 262, 378, 580
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	142, 358, 403, 550, 601
Mph1103I	ATGCAT	2 cut(s)	295, 492
MseI	TTAA	2 cut(s)	345, 644
MslI	CAYNNNNRTG	1 cut(s)	114
MspCI	CTTAAG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	490
MwoI	GCNNNNNNNGC	4 cut(s)	59, 164, 221, 290
NdeI	CATATG	2 cut(s)	286, 355
NdeII	GATC	1 cut(s)	593
NlaIII	CATG	5 cut(s)	119, 364, 375, 439, 608
NlaIV	GGNNCC	2 cut(s)	54, 351
NmuCI	GTSAC	1 cut(s)	686
NsiI	ATGCAT	2 cut(s)	295, 492
NspI	RCATGY	2 cut(s)	375, 439
PctI	GAATGC	1 cut(s)	490
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PsiI	TTATAA	2 cut(s)	17, 383
PspN4I	GGNNCC	2 cut(s)	54, 351
PspPI	GGNCC	3 cut(s)	52, 350, 450
PsrI	GAACNNNNNNTAC	2 cut(s)	90, 122
PsuI	RGATCY	1 cut(s)	593
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	345, 644
Sau3AI	GATC	1 cut(s)	593
Sau96I	GGNCC	3 cut(s)	52, 350, 450
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	5 cut(s)	178, 280, 302, 477, 519
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	6 cut(s)	5, 12, 18, 262, 378, 580
SspI	AATATT	1 cut(s)	642
SspMI	CTAG	3 cut(s)	299, 390, 461
TaaI	ACNGT	2 cut(s)	240, 658
TasI	AATT	6 cut(s)	5, 12, 18, 262, 378, 580
Tru1I	TTAA	2 cut(s)	345, 644
Tru9I	TTAA	2 cut(s)	345, 644
TscAI	CASTG	3 cut(s)	69, 139, 695
TseFI	GTSAC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	686
TspGWI	ACGGA	2 cut(s)	100, 606
TspRI	CASTG	3 cut(s)	69, 139, 695
Vha464I	CTTAAG	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	5, 580
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	2 cut(s)	375, 439
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	3 cut(s)	299, 390, 461
Zsp2I	ATGCAT	2 cut(s)	295, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.